VanWyngaardenM_etal_SeascapeGen_RCode

This R file contains pseudocode for the main analyses used in the publication "Oceanographic variation influences spatial genomic structure in the sea scallop, Placopecten magellanicus" by Van Wyngaarden, M et al. Not all steps are included in the code but examples of the major analyses (o...

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Bibliographic Details
Main Authors: Van Wyngaarden, Mallory, Snelgrove, Paul V. R., DiBacco, Claudio, Hamilton, Lorraine C., Rodriguez-Ezpeleta, Naiara, Zhan, Luyao, Beiko, Robert, Bradbury, Ian R.
Format: Dataset
Language:unknown
Published: 2018
Subjects:
sea scallop
adaptation
single nucleotide polymorphism
population genomics
outlier loci
RAD-seq
Canada
Northwest Atlantic
Online Access:http://hdl.handle.net/10255/dryad.167517
https://doi.org/10.5061/dryad.c15v5/5
Description
Summary:This R file contains pseudocode for the main analyses used in the publication "Oceanographic variation influences spatial genomic structure in the sea scallop, Placopecten magellanicus" by Van Wyngaarden, M et al. Not all steps are included in the code but examples of the major analyses (outlier selection, PCA, RDA, and multiple linear regressions) are presented. Running this code will not repeat all the analyses used in the publication but will allow readers to see what functions were used.

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