Rock ptarmigan autosomal heterozygous sites

A vcf file containing the autosomal heterozygous sites of the rock ptarmigan individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth...

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Bibliographic Details
Main Authors: Kozma, Radoslav, Melsted, Páll, Magnússon, Kristinn P., Höglund, Jacob
Format: Dataset
Language:unknown
Published: 2015
Subjects:
Effective population size
Climate hange
PSMC
rock ptarmigan
Online Access:http://hdl.handle.net/10255/dryad.102668
https://doi.org/10.5061/dryad.11p3v/6
Description
Summary:A vcf file containing the autosomal heterozygous sites of the rock ptarmigan individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth between 33 and 202 and mapping quality above 20. Indels were removed by vcftools (v0.1.13), using the '--remove-indels' function.

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