entropy_variants0.6

Input file for analysis with the "entropy" model. This file is a filtered version of the VCF file, including genotype likelihoods for loci with MAF>1%. Additionally, we randomly selected 1 SNP per contig for contigs with multiple variant sites, to ensure independence of SNPs.

Bibliographic Details
Main Authors: Underwood, Zachary E., Mandeville, Elizabeth G., Walters, Annika W.
Format: Report
Language:unknown
Published: 2015
Subjects:
Burbot
Metapopulation
Genetic structure
Genotyping by sequencing
Wind River
Online Access:http://hdl.handle.net/10255/dryad.100534
https://doi.org/10.5061/dryad.7842r/3
Description
Summary:Input file for analysis with the "entropy" model. This file is a filtered version of the VCF file, including genotype likelihoods for loci with MAF>1%. Additionally, we randomly selected 1 SNP per contig for contigs with multiple variant sites, to ensure independence of SNPs.

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