MESMO 3: Flexible phytoplankton stoichiometry and refractory dissolved organic matter
We describe the third version of Minnesota Earth System Model for Ocean biogeochemistry (MESMO 3), an Earth system model of intermediate complexity, with a dynamical ocean, dynamic–thermodynamic sea ice, and an energy–moisture-balanced atmosphere. A major feature of version 3 is the flexible <mat...
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ftdoajarticles:oai:doaj.org/article:d6657e16b30e4686b57bad4a1eb32994 2023-05-15T18:18:45+02:00 MESMO 3: Flexible phytoplankton stoichiometry and refractory dissolved organic matter K. Matsumoto T. Tanioka J. Zahn 2021-04-01T00:00:00Z https://doi.org/10.5194/gmd-14-2265-2021 https://doaj.org/article/d6657e16b30e4686b57bad4a1eb32994 EN eng Copernicus Publications https://gmd.copernicus.org/articles/14/2265/2021/gmd-14-2265-2021.pdf https://doaj.org/toc/1991-959X https://doaj.org/toc/1991-9603 doi:10.5194/gmd-14-2265-2021 1991-959X 1991-9603 https://doaj.org/article/d6657e16b30e4686b57bad4a1eb32994 Geoscientific Model Development, Vol 14, Pp 2265-2288 (2021) Geology QE1-996.5 article 2021 ftdoajarticles https://doi.org/10.5194/gmd-14-2265-2021 2022-12-31T06:12:03Z We describe the third version of Minnesota Earth System Model for Ocean biogeochemistry (MESMO 3), an Earth system model of intermediate complexity, with a dynamical ocean, dynamic–thermodynamic sea ice, and an energy–moisture-balanced atmosphere. A major feature of version 3 is the flexible <math xmlns="http://www.w3.org/1998/Math/MathML" id="M1" display="inline" overflow="scroll" dspmath="mathml"><mrow class="chem"><mi mathvariant="normal">C</mi><mo>:</mo><mi mathvariant="normal">N</mi><mo>:</mo><mi mathvariant="normal">P</mi></mrow></math> <svg:svg xmlns:svg="http://www.w3.org/2000/svg" width="41pt" height="10pt" class="svg-formula" dspmath="mathimg" md5hash="89baeb1bef20dd832e5430c0fb7046a4"><svg:image xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="gmd-14-2265-2021-ie00001.svg" width="41pt" height="10pt" src="gmd-14-2265-2021-ie00001.png"/></svg:svg> ratio for the three phytoplankton functional types represented in the model. The flexible stoichiometry is based on the power law formulation with environmental dependence on phosphate, nitrate, temperature, and light. Other new features include nitrogen fixation, water column denitrification, oxygen and temperature-dependent organic matter remineralization, and CaCO 3 production based on the concept of the residual nitrate potential growth. In addition, we describe the semi-labile and refractory dissolved organic pools of C, N, P, and Fe that can be enabled in MESMO 3 as an optional feature. The refractory dissolved organic matter can be degraded by photodegradation at the surface and hydrothermal vent degradation at the bottom. These improvements provide a basis for using MESMO 3 in further investigations of the global marine carbon cycle to changes in the environmental conditions of the past, present, and future. Article in Journal/Newspaper Sea ice Directory of Open Access Journals: DOAJ Articles Geoscientific Model Development 14 4 2265 2288 |
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Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Geology QE1-996.5 |
spellingShingle |
Geology QE1-996.5 K. Matsumoto T. Tanioka J. Zahn MESMO 3: Flexible phytoplankton stoichiometry and refractory dissolved organic matter |
topic_facet |
Geology QE1-996.5 |
description |
We describe the third version of Minnesota Earth System Model for Ocean biogeochemistry (MESMO 3), an Earth system model of intermediate complexity, with a dynamical ocean, dynamic–thermodynamic sea ice, and an energy–moisture-balanced atmosphere. A major feature of version 3 is the flexible <math xmlns="http://www.w3.org/1998/Math/MathML" id="M1" display="inline" overflow="scroll" dspmath="mathml"><mrow class="chem"><mi mathvariant="normal">C</mi><mo>:</mo><mi mathvariant="normal">N</mi><mo>:</mo><mi mathvariant="normal">P</mi></mrow></math> <svg:svg xmlns:svg="http://www.w3.org/2000/svg" width="41pt" height="10pt" class="svg-formula" dspmath="mathimg" md5hash="89baeb1bef20dd832e5430c0fb7046a4"><svg:image xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="gmd-14-2265-2021-ie00001.svg" width="41pt" height="10pt" src="gmd-14-2265-2021-ie00001.png"/></svg:svg> ratio for the three phytoplankton functional types represented in the model. The flexible stoichiometry is based on the power law formulation with environmental dependence on phosphate, nitrate, temperature, and light. Other new features include nitrogen fixation, water column denitrification, oxygen and temperature-dependent organic matter remineralization, and CaCO 3 production based on the concept of the residual nitrate potential growth. In addition, we describe the semi-labile and refractory dissolved organic pools of C, N, P, and Fe that can be enabled in MESMO 3 as an optional feature. The refractory dissolved organic matter can be degraded by photodegradation at the surface and hydrothermal vent degradation at the bottom. These improvements provide a basis for using MESMO 3 in further investigations of the global marine carbon cycle to changes in the environmental conditions of the past, present, and future. |
format |
Article in Journal/Newspaper |
author |
K. Matsumoto T. Tanioka J. Zahn |
author_facet |
K. Matsumoto T. Tanioka J. Zahn |
author_sort |
K. Matsumoto |
title |
MESMO 3: Flexible phytoplankton stoichiometry and refractory dissolved organic matter |
title_short |
MESMO 3: Flexible phytoplankton stoichiometry and refractory dissolved organic matter |
title_full |
MESMO 3: Flexible phytoplankton stoichiometry and refractory dissolved organic matter |
title_fullStr |
MESMO 3: Flexible phytoplankton stoichiometry and refractory dissolved organic matter |
title_full_unstemmed |
MESMO 3: Flexible phytoplankton stoichiometry and refractory dissolved organic matter |
title_sort |
mesmo 3: flexible phytoplankton stoichiometry and refractory dissolved organic matter |
publisher |
Copernicus Publications |
publishDate |
2021 |
url |
https://doi.org/10.5194/gmd-14-2265-2021 https://doaj.org/article/d6657e16b30e4686b57bad4a1eb32994 |
genre |
Sea ice |
genre_facet |
Sea ice |
op_source |
Geoscientific Model Development, Vol 14, Pp 2265-2288 (2021) |
op_relation |
https://gmd.copernicus.org/articles/14/2265/2021/gmd-14-2265-2021.pdf https://doaj.org/toc/1991-959X https://doaj.org/toc/1991-9603 doi:10.5194/gmd-14-2265-2021 1991-959X 1991-9603 https://doaj.org/article/d6657e16b30e4686b57bad4a1eb32994 |
op_doi |
https://doi.org/10.5194/gmd-14-2265-2021 |
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Geoscientific Model Development |
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14 |
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4 |
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2265 |
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2288 |
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