The Prokaryotic Complex of Modern and Buried Soils on the Kamchatka Peninsula

• Published in: Forests
• Main Authors: Natalia A. Manucharova, Timur D. Karimov, Maria M. Pevzner, Roman I. Nechushkin, Lev A. Pozdnyakov, Pavel Y. Stepanov, Alexey L. Stepanov
• Format: Article in Journal/Newspaper
• Language: English
• Published: MDPI AG 2022
• Subjects: volcanic soils; metabolically active prokaryotic complex; fluorescence in situ hybridization (FISH); high-throughput sequencing; Plant ecology; QK900-989; Kamchatka Peninsula; Kamchatka
• Online Access: https://doi.org/10.3390/f13071066; https://doaj.org/article/b250802596e640a8910a38750a215a6a

A prokaryotic heterotrophic mesophilic community was studied in volcanic soil samples from Kamchatka. A phylogenetic and physiological characterization of the prokaryotic complex of modern and buried soils of the Kamchatka Peninsula is given. Volcanic Paleolithic soils (2500 and 11,300 years old) and their modern equivalents were investigated. It was found that the biomass of metabolically active prokaryotes in modern volcanic and Paleolithic soils reached 50 and 40 µg/g, respectively. The proportion of archaea in the metabolically active prokaryotic complex varied from 20% to 30% and increased in variants with the application of the nitrogen-containing biopolymer chitin. The application of the additional resource to paleovolcanic soils led to an incremental increase in the proportion of metabolically active prokaryotes, which reached 50% of the total prokaryotic biomass detected, indicating the high metabolic potential of the considered soils. Phylogenetic structure characteristics of the prokaryotic metabolically active component of modern and buried volcanic soil were established by molecular biology methods (metagenomic analysis, FISH method). The phylum Proteobacteria (74%) , Acidobacteria , and Actinobacteria (14% combined) were dominant in modern soils; phylum Acidobacteria (51.8%) was dominant in paleosoils, whereas Chloroflexi (21%) and Proteobacteria (9%) were subdominant. It was determined that the potential activity of the microbial hydrolytic community, as measured by the relative response to the added resource (chitin), was found to increase in a series from modern to paleovolcanic soil. It was demonstrated that several key genes of the nitrogen cycle responsible for the processes of molecular nitrogen fixation, nitrification, and denitrification (nifH, amoA, nirK) were present in both modern and buried horizons.