Ancient permafrost staphylococci carry antibiotic resistance genes

Background: Permafrost preserves a variety of viable ancient microorganisms. Some of them can be cultivated after being kept at subzero temperatures for thousands or even millions of years. Objective: To cultivate bacterial strains from permafrost. Design: We isolated and cultivated two bacterial st...

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Bibliographic Details
Published in:Microbial Ecology in Health and Disease
Main Authors: Elena Kashuba, Alexey A. Dmitriev, Shady Mansour Kamal, Ojar Melefors, Gennady Griva, Ute Römling, Ingemar Ernberg, Vladimir Kashuba, Anatoli Brouchkov
Format: Article in Journal/Newspaper
Language:English
Published: Taylor & Francis Group 2017
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Online Access:https://doi.org/10.1080/16512235.2017.1345574
https://doaj.org/article/86495fce57354c278e570a5c4aff2be2
Description
Summary:Background: Permafrost preserves a variety of viable ancient microorganisms. Some of them can be cultivated after being kept at subzero temperatures for thousands or even millions of years. Objective: To cultivate bacterial strains from permafrost. Design: We isolated and cultivated two bacterial strains from permafrost that was obtained at Mammoth Mountain in Siberia and attributed to the Middle Miocene. Bacterial genomic DNA was sequenced with 40–60× coverage and high-quality contigs were assembled. The first strain was assigned to Staphylococcus warneri species (designated MMP1) and the second one to Staphylococcus hominis species (designated MMP2), based on the classification of 16S ribosomal RNA genes and genomic sequences. Results: Genomic sequence analysis revealed the close relation of the isolated ancient bacteria to the modern bacteria of this species. Moreover, several genes associated with resistance to different groups of antibiotics were found in the S. hominis MMP2 genome. Conclusions: These findings supports a hypothesis that antibiotic resistance has an ancient origin. The enrichment of cultivated bacterial communities with ancient permafrost strains is essential for the analysis of bacterial evolution and antibiotic resistance.