Head Kidney Transcriptome Analysis and Characterization for the Sub-Antarctic Notothenioid Fish Eleginops maclovinus
This study describes de novo transcriptome sequencing and annotation analyses for the head kidney of the sub-Antarctic notothenioid fish Eleginops maclovinus, a sister group of the Antarctic notothenioid fish clade. Moreover, E. maclovinus is one of the most eurythermal and euryhaline representative...
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ftdoajarticles:oai:doaj.org/article:12934c848ef8453d8566d22a8a1a904f 2023-05-15T13:35:54+02:00 Head Kidney Transcriptome Analysis and Characterization for the Sub-Antarctic Notothenioid Fish Eleginops maclovinus Danixa Martínez Juan Pablo Pontigo Francisco J. Morera Alejandro. Yañéz Luis Vargas-Chacoff 2018-01-01T00:00:00Z https://doi.org/10.3390/fishes3010008 https://doaj.org/article/12934c848ef8453d8566d22a8a1a904f EN eng MDPI AG http://www.mdpi.com/2410-3888/3/1/8 https://doaj.org/toc/2410-3888 2410-3888 doi:10.3390/fishes3010008 https://doaj.org/article/12934c848ef8453d8566d22a8a1a904f Fishes, Vol 3, Iss 1, Pp 8-0 (2018) Eleginops maclovinus transcriptome notothenioid immunity head kidney Biology (General) QH301-705.5 Genetics QH426-470 article 2018 ftdoajarticles https://doi.org/10.3390/fishes3010008 2022-12-31T01:30:51Z This study describes de novo transcriptome sequencing and annotation analyses for the head kidney of the sub-Antarctic notothenioid fish Eleginops maclovinus, a sister group of the Antarctic notothenioid fish clade. Moreover, E. maclovinus is one of the most eurythermal and euryhaline representatives of the Notothenioidei suborder. RNA-seq data were generated by the 454 GS Junior system, resulting in 11,207 contigs that were then assembled by the Genomic Workbench CLC software. The transcriptome was annotated by BLASTing each sequence against the universal, non-redundant NCBI database (National Center for Biotechnology Information) using the AUSTRAL-omics computer cluster. A significant number of transcripts related to innate and adaptive immunity were found in the sequences, which could be used as references in future immunological studies in E. maclovinus. Article in Journal/Newspaper Antarc* Antarctic Directory of Open Access Journals: DOAJ Articles Antarctic The Antarctic Austral Fishes 3 1 8 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Eleginops maclovinus transcriptome notothenioid immunity head kidney Biology (General) QH301-705.5 Genetics QH426-470 |
spellingShingle |
Eleginops maclovinus transcriptome notothenioid immunity head kidney Biology (General) QH301-705.5 Genetics QH426-470 Danixa Martínez Juan Pablo Pontigo Francisco J. Morera Alejandro. Yañéz Luis Vargas-Chacoff Head Kidney Transcriptome Analysis and Characterization for the Sub-Antarctic Notothenioid Fish Eleginops maclovinus |
topic_facet |
Eleginops maclovinus transcriptome notothenioid immunity head kidney Biology (General) QH301-705.5 Genetics QH426-470 |
description |
This study describes de novo transcriptome sequencing and annotation analyses for the head kidney of the sub-Antarctic notothenioid fish Eleginops maclovinus, a sister group of the Antarctic notothenioid fish clade. Moreover, E. maclovinus is one of the most eurythermal and euryhaline representatives of the Notothenioidei suborder. RNA-seq data were generated by the 454 GS Junior system, resulting in 11,207 contigs that were then assembled by the Genomic Workbench CLC software. The transcriptome was annotated by BLASTing each sequence against the universal, non-redundant NCBI database (National Center for Biotechnology Information) using the AUSTRAL-omics computer cluster. A significant number of transcripts related to innate and adaptive immunity were found in the sequences, which could be used as references in future immunological studies in E. maclovinus. |
format |
Article in Journal/Newspaper |
author |
Danixa Martínez Juan Pablo Pontigo Francisco J. Morera Alejandro. Yañéz Luis Vargas-Chacoff |
author_facet |
Danixa Martínez Juan Pablo Pontigo Francisco J. Morera Alejandro. Yañéz Luis Vargas-Chacoff |
author_sort |
Danixa Martínez |
title |
Head Kidney Transcriptome Analysis and Characterization for the Sub-Antarctic Notothenioid Fish Eleginops maclovinus |
title_short |
Head Kidney Transcriptome Analysis and Characterization for the Sub-Antarctic Notothenioid Fish Eleginops maclovinus |
title_full |
Head Kidney Transcriptome Analysis and Characterization for the Sub-Antarctic Notothenioid Fish Eleginops maclovinus |
title_fullStr |
Head Kidney Transcriptome Analysis and Characterization for the Sub-Antarctic Notothenioid Fish Eleginops maclovinus |
title_full_unstemmed |
Head Kidney Transcriptome Analysis and Characterization for the Sub-Antarctic Notothenioid Fish Eleginops maclovinus |
title_sort |
head kidney transcriptome analysis and characterization for the sub-antarctic notothenioid fish eleginops maclovinus |
publisher |
MDPI AG |
publishDate |
2018 |
url |
https://doi.org/10.3390/fishes3010008 https://doaj.org/article/12934c848ef8453d8566d22a8a1a904f |
geographic |
Antarctic The Antarctic Austral |
geographic_facet |
Antarctic The Antarctic Austral |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_source |
Fishes, Vol 3, Iss 1, Pp 8-0 (2018) |
op_relation |
http://www.mdpi.com/2410-3888/3/1/8 https://doaj.org/toc/2410-3888 2410-3888 doi:10.3390/fishes3010008 https://doaj.org/article/12934c848ef8453d8566d22a8a1a904f |
op_doi |
https://doi.org/10.3390/fishes3010008 |
container_title |
Fishes |
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3 |
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1 |
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8 |
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1766071965288759296 |