Head Kidney Transcriptome Analysis and Characterization for the Sub-Antarctic Notothenioid Fish Eleginops maclovinus

This study describes de novo transcriptome sequencing and annotation analyses for the head kidney of the sub-Antarctic notothenioid fish Eleginops maclovinus, a sister group of the Antarctic notothenioid fish clade. Moreover, E. maclovinus is one of the most eurythermal and euryhaline representative...

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Bibliographic Details
Published in:Fishes
Main Authors: Danixa Martínez, Juan Pablo Pontigo, Francisco J. Morera, Alejandro. Yañéz, Luis Vargas-Chacoff
Format: Article in Journal/Newspaper
Language:English
Published: MDPI AG 2018
Subjects:
Eleginops maclovinus
transcriptome
notothenioid
immunity
head kidney
Biology (General)
QH301-705.5
Genetics
QH426-470
Antarctic
The Antarctic
Austral
Antarc*
Online Access:https://doi.org/10.3390/fishes3010008
https://doaj.org/article/12934c848ef8453d8566d22a8a1a904f
Description
Summary:This study describes de novo transcriptome sequencing and annotation analyses for the head kidney of the sub-Antarctic notothenioid fish Eleginops maclovinus, a sister group of the Antarctic notothenioid fish clade. Moreover, E. maclovinus is one of the most eurythermal and euryhaline representatives of the Notothenioidei suborder. RNA-seq data were generated by the 454 GS Junior system, resulting in 11,207 contigs that were then assembled by the Genomic Workbench CLC software. The transcriptome was annotated by BLASTing each sequence against the universal, non-redundant NCBI database (National Center for Biotechnology Information) using the AUSTRAL-omics computer cluster. A significant number of transcripts related to innate and adaptive immunity were found in the sequences, which could be used as references in future immunological studies in E. maclovinus.

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