Supporting data for: Late Quaternary dynamics of Arctic biota revealed by ancient environmental metagenomics
ALTERNATIVE DOWNLOAD FROM FILESENDER To access the data, click "Read Full Description" [+] and then click here [Dataset abstract] This dataset contains the assembled genome contigs (whole genome level) of the PhyloNorway plant database used in Wang et al. 2021 Late Quaternary Dynamics of A...
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Format: | Other/Unknown Material |
Language: | English |
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DataverseNO
2019
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Online Access: | https://doi.org/10.18710/3CVQAG |
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ftdataverseno:doi:10.18710/3CVQAG |
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openpolar |
institution |
Open Polar |
collection |
DataverseNO |
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ftdataverseno |
language |
English |
topic |
Earth and Environmental Sciences Medicine Health and Life Sciences plant DNA chloroplast DNA environmental DNA nuclear ribosomal DNA phylogenomic polar genome contigs |
spellingShingle |
Earth and Environmental Sciences Medicine Health and Life Sciences plant DNA chloroplast DNA environmental DNA nuclear ribosomal DNA phylogenomic polar genome contigs Wang, Yucheng Pedersen, Mikkel Winther Alsos, Inger Greve De Sanctis, Bianca Racimo, Fernando Prohaska, Ana Coissac, Eric Owens, Hannah Lois Merkel, Marie Kristine Føreid Fernandez-Guerra, Antonio Rouillard, Alexandra Lammers, Youri Alberti, Adriana Denoeud, France Money, Daniel Ruter, Anthony H. McColl, Hugh Larsen, Nicolaj Krog Cherezova, Anna A. Edwards, Mary E. Fedorov, Grigory B. Haile, James Orlando, Ludovic Vinner, Lasse Korneliussen, Thorfinn Sand Beilman, David W. Bjørk, Anders A. Cao, Jialu Dockter, Christoph Esdale, Julie Gusarova, Galina Kjeldsen, Kristian K. Mangerud, Jan Rasic, Jeffrey T. Skadhauge, Birgitte Svendsen, John-Inge Tikhonov, Alexei Wincker, Patrick Xing, Yingchun Zhang, Yubin Froese, Duane G. Rahbek, Carsten Bravo Nogues, David Holden, Philip B. Edwards, Neil R. Durbin, Richard Meltzer, David J. Kjær, Kurt H. Möller, Per Willerslev, Eske Supporting data for: Late Quaternary dynamics of Arctic biota revealed by ancient environmental metagenomics |
topic_facet |
Earth and Environmental Sciences Medicine Health and Life Sciences plant DNA chloroplast DNA environmental DNA nuclear ribosomal DNA phylogenomic polar genome contigs |
description |
ALTERNATIVE DOWNLOAD FROM FILESENDER To access the data, click "Read Full Description" [+] and then click here [Dataset abstract] This dataset contains the assembled genome contigs (whole genome level) of the PhyloNorway plant database used in Wang et al. 2021 Late Quaternary Dynamics of Arctic Biota Revealed by Ancient Environmental Metagenomics. Methods for generating this database can be found in the paper. The 7 fasta files are the database. The PhyloNorway_com_acc2TaxaID.txt supplies a NCBI format acc2TaxaID file matching accession ID to NCBI TaxaID. Additional information about the database can be found in Alsos et al. 2020. [Article abstract Wang et al. submitted] During the last glacial-interglacial cycle, arctic biota experienced drastic climatic changes, yet the nature, extent and rate of their responses are not fully understood. Here we report the first large-scale environmental DNA metagenomic study of ancient plant and mammal communities using 535 permafrost and lake sediment samples from across the Arctic spanning the last 50,000 years. Additionally, we present 1,541 contemporary plant genome assemblies generated as reference sequences. Our study provides several novel insights into the long-term dynamics of the arctic biota at circumpolar and regional scales. Key findings include: (i) a relatively homogeneous steppe-tundra flora dominated the Arctic during the Last Glacial Maximum, followed by regional divergence of vegetation in the Holocene; (ii) certain grazing animals consistently co-occurred in space and time; (iii) humans appear to have been a minor factor in driving animal distributions; (iv) higher effective precipitation, and an increase in the proportion of wetland plants, show negative effects on animal diversity; (v) the persistence of the steppe-tundra vegetation in northern Siberia allowed the late survival of several now-extinct megafauna species, including woolly mammoth to 3.9±0.2 ka (kilo annum Before Present) and woolly rhinoceros to 9.8±0.2 ka; and (vi) phylogenetic analysis ... |
author2 |
Alsos, Inger Greve Coissac, Eric Merkel, Marie K. F. Wang, Yucheng Alberti, Adriana Lammers, Youri Denoeud, France Wincker, Patrick UiT The Arctic University of Norway The Research Council of Norway Norwegian Biodiversity Information Centre |
format |
Other/Unknown Material |
author |
Wang, Yucheng Pedersen, Mikkel Winther Alsos, Inger Greve De Sanctis, Bianca Racimo, Fernando Prohaska, Ana Coissac, Eric Owens, Hannah Lois Merkel, Marie Kristine Føreid Fernandez-Guerra, Antonio Rouillard, Alexandra Lammers, Youri Alberti, Adriana Denoeud, France Money, Daniel Ruter, Anthony H. McColl, Hugh Larsen, Nicolaj Krog Cherezova, Anna A. Edwards, Mary E. Fedorov, Grigory B. Haile, James Orlando, Ludovic Vinner, Lasse Korneliussen, Thorfinn Sand Beilman, David W. Bjørk, Anders A. Cao, Jialu Dockter, Christoph Esdale, Julie Gusarova, Galina Kjeldsen, Kristian K. Mangerud, Jan Rasic, Jeffrey T. Skadhauge, Birgitte Svendsen, John-Inge Tikhonov, Alexei Wincker, Patrick Xing, Yingchun Zhang, Yubin Froese, Duane G. Rahbek, Carsten Bravo Nogues, David Holden, Philip B. Edwards, Neil R. Durbin, Richard Meltzer, David J. Kjær, Kurt H. Möller, Per Willerslev, Eske |
author_facet |
Wang, Yucheng Pedersen, Mikkel Winther Alsos, Inger Greve De Sanctis, Bianca Racimo, Fernando Prohaska, Ana Coissac, Eric Owens, Hannah Lois Merkel, Marie Kristine Føreid Fernandez-Guerra, Antonio Rouillard, Alexandra Lammers, Youri Alberti, Adriana Denoeud, France Money, Daniel Ruter, Anthony H. McColl, Hugh Larsen, Nicolaj Krog Cherezova, Anna A. Edwards, Mary E. Fedorov, Grigory B. Haile, James Orlando, Ludovic Vinner, Lasse Korneliussen, Thorfinn Sand Beilman, David W. Bjørk, Anders A. Cao, Jialu Dockter, Christoph Esdale, Julie Gusarova, Galina Kjeldsen, Kristian K. Mangerud, Jan Rasic, Jeffrey T. Skadhauge, Birgitte Svendsen, John-Inge Tikhonov, Alexei Wincker, Patrick Xing, Yingchun Zhang, Yubin Froese, Duane G. Rahbek, Carsten Bravo Nogues, David Holden, Philip B. Edwards, Neil R. Durbin, Richard Meltzer, David J. Kjær, Kurt H. Möller, Per Willerslev, Eske |
author_sort |
Wang, Yucheng |
title |
Supporting data for: Late Quaternary dynamics of Arctic biota revealed by ancient environmental metagenomics |
title_short |
Supporting data for: Late Quaternary dynamics of Arctic biota revealed by ancient environmental metagenomics |
title_full |
Supporting data for: Late Quaternary dynamics of Arctic biota revealed by ancient environmental metagenomics |
title_fullStr |
Supporting data for: Late Quaternary dynamics of Arctic biota revealed by ancient environmental metagenomics |
title_full_unstemmed |
Supporting data for: Late Quaternary dynamics of Arctic biota revealed by ancient environmental metagenomics |
title_sort |
supporting data for: late quaternary dynamics of arctic biota revealed by ancient environmental metagenomics |
publisher |
DataverseNO |
publishDate |
2019 |
url |
https://doi.org/10.18710/3CVQAG |
long_lat |
ENVELOPE(14.817,14.817,67.517,67.517) |
geographic |
Arctic Alsos |
geographic_facet |
Arctic Alsos |
genre |
Arctic permafrost Tundra Siberia |
genre_facet |
Arctic permafrost Tundra Siberia |
op_source |
Herbarium TROM at Tromsø Museum, Norway. |
op_relation |
The raw data of PhyloNorway plant genome database is available at EMBL-ENA with project accession PRJEB43865. Standard barcodes (ITS2, matK and rbcL) are available at BOLDSYSTEMS.org under the name PhyloNorway. https://doi.org/10.18710/3CVQAG |
op_doi |
https://doi.org/10.18710/3CVQAG |
_version_ |
1766317410790408192 |
spelling |
ftdataverseno:doi:10.18710/3CVQAG 2023-05-15T14:46:09+02:00 Supporting data for: Late Quaternary dynamics of Arctic biota revealed by ancient environmental metagenomics Wang, Yucheng Pedersen, Mikkel Winther Alsos, Inger Greve De Sanctis, Bianca Racimo, Fernando Prohaska, Ana Coissac, Eric Owens, Hannah Lois Merkel, Marie Kristine Føreid Fernandez-Guerra, Antonio Rouillard, Alexandra Lammers, Youri Alberti, Adriana Denoeud, France Money, Daniel Ruter, Anthony H. McColl, Hugh Larsen, Nicolaj Krog Cherezova, Anna A. Edwards, Mary E. Fedorov, Grigory B. Haile, James Orlando, Ludovic Vinner, Lasse Korneliussen, Thorfinn Sand Beilman, David W. Bjørk, Anders A. Cao, Jialu Dockter, Christoph Esdale, Julie Gusarova, Galina Kjeldsen, Kristian K. Mangerud, Jan Rasic, Jeffrey T. Skadhauge, Birgitte Svendsen, John-Inge Tikhonov, Alexei Wincker, Patrick Xing, Yingchun Zhang, Yubin Froese, Duane G. Rahbek, Carsten Bravo Nogues, David Holden, Philip B. Edwards, Neil R. Durbin, Richard Meltzer, David J. Kjær, Kurt H. Möller, Per Willerslev, Eske Alsos, Inger Greve Coissac, Eric Merkel, Marie K. F. Wang, Yucheng Alberti, Adriana Lammers, Youri Denoeud, France Wincker, Patrick UiT The Arctic University of Norway The Research Council of Norway Norwegian Biodiversity Information Centre 2019-08-01 https://doi.org/10.18710/3CVQAG English eng DataverseNO The raw data of PhyloNorway plant genome database is available at EMBL-ENA with project accession PRJEB43865. Standard barcodes (ITS2, matK and rbcL) are available at BOLDSYSTEMS.org under the name PhyloNorway. https://doi.org/10.18710/3CVQAG Herbarium TROM at Tromsø Museum, Norway. Earth and Environmental Sciences Medicine Health and Life Sciences plant DNA chloroplast DNA environmental DNA nuclear ribosomal DNA phylogenomic polar genome contigs Partial DNA sequence assemblies of vascular plant genomes 2019 ftdataverseno https://doi.org/10.18710/3CVQAG 2023-03-01T23:49:12Z ALTERNATIVE DOWNLOAD FROM FILESENDER To access the data, click "Read Full Description" [+] and then click here [Dataset abstract] This dataset contains the assembled genome contigs (whole genome level) of the PhyloNorway plant database used in Wang et al. 2021 Late Quaternary Dynamics of Arctic Biota Revealed by Ancient Environmental Metagenomics. Methods for generating this database can be found in the paper. The 7 fasta files are the database. The PhyloNorway_com_acc2TaxaID.txt supplies a NCBI format acc2TaxaID file matching accession ID to NCBI TaxaID. Additional information about the database can be found in Alsos et al. 2020. [Article abstract Wang et al. submitted] During the last glacial-interglacial cycle, arctic biota experienced drastic climatic changes, yet the nature, extent and rate of their responses are not fully understood. Here we report the first large-scale environmental DNA metagenomic study of ancient plant and mammal communities using 535 permafrost and lake sediment samples from across the Arctic spanning the last 50,000 years. Additionally, we present 1,541 contemporary plant genome assemblies generated as reference sequences. Our study provides several novel insights into the long-term dynamics of the arctic biota at circumpolar and regional scales. Key findings include: (i) a relatively homogeneous steppe-tundra flora dominated the Arctic during the Last Glacial Maximum, followed by regional divergence of vegetation in the Holocene; (ii) certain grazing animals consistently co-occurred in space and time; (iii) humans appear to have been a minor factor in driving animal distributions; (iv) higher effective precipitation, and an increase in the proportion of wetland plants, show negative effects on animal diversity; (v) the persistence of the steppe-tundra vegetation in northern Siberia allowed the late survival of several now-extinct megafauna species, including woolly mammoth to 3.9±0.2 ka (kilo annum Before Present) and woolly rhinoceros to 9.8±0.2 ka; and (vi) phylogenetic analysis ... Other/Unknown Material Arctic permafrost Tundra Siberia DataverseNO Arctic Alsos ENVELOPE(14.817,14.817,67.517,67.517) |