Whole-genome sequencing of 13 Arctic plants and draft genomes of Oxyria digyna and Cochlearia groenlandica ...
Genome assemblies and gene annotation files of two arctic plants collected from Svalbard. These genome assemblies were constructed based on high-fidelity (HiFi) long-read sequencing data of Pacific Biosciences (PacBio). De novo genome assembly was performed using hifiasm and gene annotation was done...
| Main Authors: | , , |
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| Format: | Article in Journal/Newspaper |
| Language: | unknown |
| Published: |
figshare
2024
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| Subjects: | |
| Online Access: | https://dx.doi.org/10.6084/m9.figshare.c.6965802.v1 https://springernature.figshare.com/collections/Whole-genome_sequencing_of_13_Arctic_plants_and_draft_genomes_of_Oxyria_digyna_and_Cochlearia_groenlandica/6965802/1 |
| Summary: | Genome assemblies and gene annotation files of two arctic plants collected from Svalbard. These genome assemblies were constructed based on high-fidelity (HiFi) long-read sequencing data of Pacific Biosciences (PacBio). De novo genome assembly was performed using hifiasm and gene annotation was done by BRAKER2. Protein homology searches were conducted using mmseqs2, and variant impacts were analyzed using SnpEff. Repetitive sequences were identified using RepeatModeler and RFSB. ... |
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