Additional file 2: of Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

Phylogenomic analysis. Full data associated with the 383 ohnologue gene trees used to define LORe and AORe regions, including: (i) NCBI accession number and gene/protein details for sequence capture probes, (ii) genomic location of ohnologues in the Atlantic salmon genome, (iii) the length of each s...

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Bibliographic Details
Main Authors: Robertson, Fiona, Gundappa, Manu, Grammes, Fabian, Hvidsten, Torgeir, Redmond, Anthony, SigbjøRn Lien, Martin, Samuel, Holland, Peter, Sandve, Simen, Macqueen, Daniel
Format: Dataset
Language:unknown
Published: Figshare 2017
Subjects:
Microbiology
FOS Biological sciences
Cell Biology
Genetics
Molecular Biology
Evolutionary Biology
59999 Environmental Sciences not elsewhere classified
FOS Earth and related environmental sciences
Ecology
69999 Biological Sciences not elsewhere classified
Developmental Biology
Marine Biology
Cancer
110309 Infectious Diseases
FOS Health sciences
Plant Biology
60506 Virology
Computational Biology
Atlantic salmon
Online Access:https://dx.doi.org/10.6084/m9.figshare.c.3803629_d2.v1
https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Lineage-specific_rediploidization_is_a_mechanism_to_explain_time-lags_between_genome_duplication_and_evolutionary_diversification/5110216/1
Description
Summary:Phylogenomic analysis. Full data associated with the 383 ohnologue gene trees used to define LORe and AORe regions, including: (i) NCBI accession number and gene/protein details for sequence capture probes, (ii) genomic location of ohnologues in the Atlantic salmon genome, (iii) the length of each sequence alignment, (iv) the substitution model used for Bayesian phylogenetic analysis, (iv) the number of inferred rediploidization events (v), each gene tree (nexus format), and (vi) alignments used to generate each gene tree (fasta format). (XLSX 1984 kb)

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