Additional file 3: of Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles

Comparative dating tree for the CYP26 subfamily. Divergence dates of the CYP26 sequences were estimated using fossil-based calibration intervals. Cladogram node dates represent estimation of the mean node height and the highest posterior density intervals fixed at 95% are shown in parentheses. Geolo...

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Bibliographic Details
Main Authors: JoĂŁo Carvalho, Theodosiou, Maria, Chen, Jie, Chevret, Pascale, Alvarez, Susana, Lera, Angel De, Laudet, Vincent, Croce, Jenifer, Schubert, Michael
Format: Report
Language:unknown
Published: Figshare 2017
Subjects:
Evolutionary Biology
FOS Biological sciences
59999 Environmental Sciences not elsewhere classified
FOS Earth and related environmental sciences
39999 Chemical Sciences not elsewhere classified
FOS Chemical sciences
69999 Biological Sciences not elsewhere classified
Inorganic Chemistry
Crassostrea gigas
Online Access:https://dx.doi.org/10.6084/m9.figshare.c.3669937_d7.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_3_of_Lineage-specific_duplication_of_amphioxus_retinoic_acid_degrading_enzymes_CYP26_resulted_in_sub-functionalization_of_patterning_and_homeostatic_roles/4568917/1
Description
Summary:Comparative dating tree for the CYP26 subfamily. Divergence dates of the CYP26 sequences were estimated using fossil-based calibration intervals. Cladogram node dates represent estimation of the mean node height and the highest posterior density intervals fixed at 95% are shown in parentheses. Geological era abbreviations: Cam, Cambrian; Car, Carboniferous; Cre, Cretaceous; Dev, Devonian; Jur, Jurassic; Ord, Ordovician; Per, Permian; Sil, Silurian; Tri, Triassic. Species name abbreviations: B.b., Branchiostoma belcheri (in blue); B.f., Branchiostoma floridae (in red); B.l., Branchiostoma lanceolatum (in green); C.g., Crassostrea gigas; C.i., Ciona intestinalis; C.m., Callorhinchus milii; C.t., Capitella teleta; D.r., Danio rerio; G.a., Gasterosteus aculeatus; G.g., Gallus gallus; H.s., Homo sapiens; L.a. Lingula anatina; L.c., Latimeria chalumnae; L.e., Leucoraja erinacea; L.g., Lottia gigantea; L.j., Lethenteron japonicum; L.o., Lepisosteus oculatus; M.d., Monodelphis domestica; M.m., Mus musculus; O.b., Octopus bimaculoides; O.l., Oryzias latipes; P.c., Priapulus caudatus; P.f., Ptychodera flava; P.m., Petromyzon marinus; S.k., Saccoglossus kowalevskii; S.p., Strongylocentrotus purpuratus; T.r., Takifugu rubripes; X.t., Xenopus tropicalis. (PDF 271 kb)

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