Additional file 15: Figure S7. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

Phylogenetic analysis of G. rostochiensis pathotypes. A. A maximum likelihood phylogeny based on 730,705 genome wide SNPs. Two distinct groups of Ro1 are together separated from Ro2, Ro3, Ro4 and Ro5. Node labels indicate bootstrap support values for 100 iterations. B. Principle component analysis (...

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Bibliographic Details
Main Authors: Akker, Sebastian Eves-Van Den, Laetsch, Dominik, Thorpe, Peter, Lilley, Catherine, Danchin, Etienne, Rocha, Martine Da, Rancurel, Corinne, Holroyd, Nancy, Cotton, James, Szitenberg, Amir, Grenier, Eric, Montarry, Josselin, Mimee, Benjamin, Marc-Olivier Duceppe, Boyes, Ian, Marvin, Jessica, Jones, Laura, Hazijah Yusup, Lafond-Lapalme, Joël, Esquibet, Magali, Sabeh, Michael, Rott, Michael, Overmars, Hein, Finkers-Tomczak, Anna, Smant, Geert, Koutsovoulos, Georgios, Blok, Vivian, Mantelin, Sophie, Cock, Peter, Phillips, Wendy, Henrissat, Bernard, Urwin, Peter, Blaxter, Mark, Jones, John
Format: Report
Language:unknown
Published: Figshare 2016
Subjects:
Genetics
FOS Biological sciences
59999 Environmental Sciences not elsewhere classified
FOS Earth and related environmental sciences
Ecology
Sociology
FOS Sociology
69999 Biological Sciences not elsewhere classified
Newfoundland
Online Access:https://dx.doi.org/10.6084/m9.figshare.c.3619121_d10.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_15_Figure_S7_of_The_genome_of_the_yellow_potato_cyst_nematode_Globodera_rostochiensis_reveals_insights_into_the_basis_of_parasitism_and_virulence/4388198/1
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Summary:Phylogenetic analysis of G. rostochiensis pathotypes. A. A maximum likelihood phylogeny based on 730,705 genome wide SNPs. Two distinct groups of Ro1 are together separated from Ro2, Ro3, Ro4 and Ro5. Node labels indicate bootstrap support values for 100 iterations. B. Principle component analysis (PCA) based on the same dataset suggest that for pathotype Ro1, intra-pathotype variation is similar to inter-pathotype variation. REF Ro1 = Reference strain Ro1 assembly, MAR149 Ro1 = British Columbia, QC Ro1 = Quebec, Ro19 Ro1 = European, NFLD Ro1 = Newfoundland, SCRI_Ro2, SCRI_Ro3, SCRI_Ro4, SCRI_Ro5 are pathotype populations from the James Hutton Institute collection. (PDF 1636 kb)

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