Crassostrea gigas high-throughput bisulfite sequencing (gill tissue)

This fileset contains two files in generic feature format (GFF) of methylation-enriched high-throughput bisulfite sequencing data for Pacific oyster (Crassostrea gigas), gill tissue. The first GFF includes the location and proportion of methylation for all analyzed CpG dinucleotides with greater tha...

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Bibliographic Details
Main Authors: Gavery, Mackenzie, Roberts, Steven
Format: Dataset
Language:unknown
Published: figshare 2013
Subjects:
Physiology
FOS Biological sciences
Marine Biology
60102 Bioinformatics
FOS Computer and information sciences
Genetics
Molecular Biology
Pacific
Crassostrea gigas
Pacific oyster
Online Access:https://dx.doi.org/10.6084/m9.figshare.749728.v7
https://figshare.com/articles/dataset/Crassostrea_gigas_high_throughput_bisulfite_sequencing_gill_tissue_/749728/7
Description
Summary:This fileset contains two files in generic feature format (GFF) of methylation-enriched high-throughput bisulfite sequencing data for Pacific oyster (Crassostrea gigas), gill tissue. The first GFF includes the location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage Cgigas_gill_HTbisulfiteSeq_CG_AllData.gff. The second GFF is limited to those CpG loci where the proportion of methylation is ≥ 0.5 (Cgigas_gill_HTbisulfiteSeq_CG_methylated.gff) In addition, this fileset includes the SQL queries used to derive each of the GFF files from the original methratio output. A link to the public methratio dataset, which includes the unfiltered methylation data for all cytosines covered, can be found below.

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