Population genomes from 3 blooms in the Southern Ocean
Files include: #1: 73 population genomes from the Southern Ocean, assembled with metaSPAdes, and characterized and curated using anvi'o v.4. #2: An excel table summarizing features of the population genomes, including completion/redundancy processed from within anvi'o, and taxonomy inferen...
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| Format: | Dataset |
| Language: | unknown |
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figshare
2018
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| Online Access: | https://dx.doi.org/10.6084/m9.figshare.6026570.v1 https://figshare.com/articles/Population_genomes_from_3_blooms_in_the_Southern_Ocean/6026570/1 |
| Summary: | Files include: #1: 73 population genomes from the Southern Ocean, assembled with metaSPAdes, and characterized and curated using anvi'o v.4. #2: An excel table summarizing features of the population genomes, including completion/redundancy processed from within anvi'o, and taxonomy inferences from CheckM. Notice: some of the taxonomic hist shall not be trusted due to their eukaryotic nature. #3: a world map with approximate coordinates of each bloom. #4: Anvi'o CONTIGS, PROFILE and AUXILIARY databases. #5: Anvi'o binning summary results (MAGs_FINAL collections). With these files, it is possible to scrutinize every MAG in the context of recruited reads across metagenomes, and to inspect any contig of interest the way it is described in this tweet: ---https://twitter.com/tomodelmont/status/976883939615956993 --- PS: I skipped SNVs calling for this analysis, as the objective was only to characterize population genomes. That's all for now :) |
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