Raw metagenomic co-assemblies
Co-assemblies were done using MetaSpades v3.11.0, and scaffolds were renamed using anvi'o v.4. PHANTASTIC_ICE: ice samples from the Antarctic peninsula in blooming conditions (Summer 2014-2015) PHANTASTIC_RSP: surface water samples from the Ross Sea Polynya in blooming conditions (Summer 2013-2...
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Online Access: | https://dx.doi.org/10.6084/m9.figshare.6016220.v1 https://figshare.com/articles/Raw_metagenomic_co-assemblies/6016220/1 |
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ftdatacite:10.6084/m9.figshare.6016220.v1 2023-05-15T13:36:13+02:00 Raw metagenomic co-assemblies Delmont, Tom Post, Anton 2018 https://dx.doi.org/10.6084/m9.figshare.6016220.v1 https://figshare.com/articles/Raw_metagenomic_co-assemblies/6016220/1 unknown figshare https://dx.doi.org/10.6084/m9.figshare.6016220 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 CC0 60102 Bioinformatics FOS Computer and information sciences 60202 Community Ecology excl. Invasive Species Ecology FOS Biological sciences Computational Biology 60408 Genomics 60504 Microbial Ecology Microbiology Molecular Biology dataset Dataset 2018 ftdatacite https://doi.org/10.6084/m9.figshare.6016220.v1 https://doi.org/10.6084/m9.figshare.6016220 2021-11-05T12:55:41Z Co-assemblies were done using MetaSpades v3.11.0, and scaffolds were renamed using anvi'o v.4. PHANTASTIC_ICE: ice samples from the Antarctic peninsula in blooming conditions (Summer 2014-2015) PHANTASTIC_RSP: surface water samples from the Ross Sea Polynya in blooming conditions (Summer 2013-2014) PHANTASTIC_AAC: surface water samples from the antarctic circumpolar current between the RSP and Tasmania in blooming conditions (Summer 2013-2014) My 2 cents: use the "1000nt" FASTA files to explore genes and functions, and the smaller "2500nt" FASTA files if only interested in genome-resolved metagenomics (e.g., to characterize population genomes). The later was already done using anvi'o v.4 (recovery of 73 MAGs, see second item in the same project). Dataset Antarc* Antarctic Antarctic Peninsula Ross Sea DataCite Metadata Store (German National Library of Science and Technology) Antarctic Antarctic Peninsula Ross Sea The Antarctic |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
60102 Bioinformatics FOS Computer and information sciences 60202 Community Ecology excl. Invasive Species Ecology FOS Biological sciences Computational Biology 60408 Genomics 60504 Microbial Ecology Microbiology Molecular Biology |
spellingShingle |
60102 Bioinformatics FOS Computer and information sciences 60202 Community Ecology excl. Invasive Species Ecology FOS Biological sciences Computational Biology 60408 Genomics 60504 Microbial Ecology Microbiology Molecular Biology Delmont, Tom Post, Anton Raw metagenomic co-assemblies |
topic_facet |
60102 Bioinformatics FOS Computer and information sciences 60202 Community Ecology excl. Invasive Species Ecology FOS Biological sciences Computational Biology 60408 Genomics 60504 Microbial Ecology Microbiology Molecular Biology |
description |
Co-assemblies were done using MetaSpades v3.11.0, and scaffolds were renamed using anvi'o v.4. PHANTASTIC_ICE: ice samples from the Antarctic peninsula in blooming conditions (Summer 2014-2015) PHANTASTIC_RSP: surface water samples from the Ross Sea Polynya in blooming conditions (Summer 2013-2014) PHANTASTIC_AAC: surface water samples from the antarctic circumpolar current between the RSP and Tasmania in blooming conditions (Summer 2013-2014) My 2 cents: use the "1000nt" FASTA files to explore genes and functions, and the smaller "2500nt" FASTA files if only interested in genome-resolved metagenomics (e.g., to characterize population genomes). The later was already done using anvi'o v.4 (recovery of 73 MAGs, see second item in the same project). |
format |
Dataset |
author |
Delmont, Tom Post, Anton |
author_facet |
Delmont, Tom Post, Anton |
author_sort |
Delmont, Tom |
title |
Raw metagenomic co-assemblies |
title_short |
Raw metagenomic co-assemblies |
title_full |
Raw metagenomic co-assemblies |
title_fullStr |
Raw metagenomic co-assemblies |
title_full_unstemmed |
Raw metagenomic co-assemblies |
title_sort |
raw metagenomic co-assemblies |
publisher |
figshare |
publishDate |
2018 |
url |
https://dx.doi.org/10.6084/m9.figshare.6016220.v1 https://figshare.com/articles/Raw_metagenomic_co-assemblies/6016220/1 |
geographic |
Antarctic Antarctic Peninsula Ross Sea The Antarctic |
geographic_facet |
Antarctic Antarctic Peninsula Ross Sea The Antarctic |
genre |
Antarc* Antarctic Antarctic Peninsula Ross Sea |
genre_facet |
Antarc* Antarctic Antarctic Peninsula Ross Sea |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.6016220 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_rightsnorm |
CC0 |
op_doi |
https://doi.org/10.6084/m9.figshare.6016220.v1 https://doi.org/10.6084/m9.figshare.6016220 |
_version_ |
1766075496316010496 |