Raw metagenomic co-assemblies

Co-assemblies were done using MetaSpades v3.11.0, and scaffolds were renamed using anvi'o v.4. PHANTASTIC_ICE: ice samples from the Antarctic peninsula in blooming conditions (Summer 2014-2015) PHANTASTIC_RSP: surface water samples from the Ross Sea Polynya in blooming conditions (Summer 2013-2...

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Bibliographic Details
Main Authors: Delmont, Tom, Post, Anton
Format: Dataset
Language:unknown
Published: figshare 2018
Subjects:
60102 Bioinformatics
FOS Computer and information sciences
60202 Community Ecology excl. Invasive Species Ecology
FOS Biological sciences
Computational Biology
60408 Genomics
60504 Microbial Ecology
Microbiology
Molecular Biology
Antarctic
Antarctic Peninsula
Ross Sea
The Antarctic
Antarc*
Online Access:https://dx.doi.org/10.6084/m9.figshare.6016220.v1
https://figshare.com/articles/Raw_metagenomic_co-assemblies/6016220/1
Description
Summary:Co-assemblies were done using MetaSpades v3.11.0, and scaffolds were renamed using anvi'o v.4. PHANTASTIC_ICE: ice samples from the Antarctic peninsula in blooming conditions (Summer 2014-2015) PHANTASTIC_RSP: surface water samples from the Ross Sea Polynya in blooming conditions (Summer 2013-2014) PHANTASTIC_AAC: surface water samples from the antarctic circumpolar current between the RSP and Tasmania in blooming conditions (Summer 2013-2014) My 2 cents: use the "1000nt" FASTA files to explore genes and functions, and the smaller "2500nt" FASTA files if only interested in genome-resolved metagenomics (e.g., to characterize population genomes). The later was already done using anvi'o v.4 (recovery of 73 MAGs, see second item in the same project).

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