Annotation of de novo assembly from Arctic charr in Lake Thingvallavatn, Iceland
Tab-delimited text file with detailed annotation of all the filtered transcripts in the Trinity assembly. gene_id: Trinity gene identification code transcript_id: Trinity transcript identification code sprot_Top_BLASTX_hit: Top blastx hit from the SwissProt database TrEMBL_Top_BLASTX_hit: Top blastx...
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ftdatacite:10.6084/m9.figshare.5445610 2023-05-15T14:30:11+02:00 Annotation of de novo assembly from Arctic charr in Lake Thingvallavatn, Iceland Guðbrandsson, Jóhannes 2018 https://dx.doi.org/10.6084/m9.figshare.5445610 https://figshare.com/articles/dataset/Annotation_of_de_novo_assembly_from_Arctic_charr_in_Lake_Thingvallavatn_Iceland/5445610 unknown figshare Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Developmental Biology 60305 Evolution of Developmental Systems FOS Biological sciences Evolutionary Biology 60204 Freshwater Ecology 60405 Gene Expression incl. Microarray and other genome-wide approaches dataset Dataset 2018 ftdatacite https://doi.org/10.6084/m9.figshare.5445610 2021-11-05T12:55:41Z Tab-delimited text file with detailed annotation of all the filtered transcripts in the Trinity assembly. gene_id: Trinity gene identification code transcript_id: Trinity transcript identification code sprot_Top_BLASTX_hit: Top blastx hit from the SwissProt database TrEMBL_Top_BLASTX_hit: Top blastx hit from the TrEMBL database RNAMMER: ribosomal RNA prediction prot_id: Id for protein prediction prot_coords: Coordinates for predicted proteins sprot_Top_BLASTP_hit: Top blastp hit for predicted proteins from the SwissProt database TrEMBL_Top_BLASTP_hit: Top blastp hit for predicted proteins from the TrEMBL database Pfam: Protein domain prediction from Pfam SignalP: Prediction of signal peptides TmHMM: Prediction for transmembrane domains eggnog: Annotation to the eggNOG database gene_ontology_blast: Gene ontology categories based on blast results from SwissProt and TrEMBL gene_ontology_pfam: Gene ontology based on Pfam protein domains SSncbi_Top_BLASTN_trans: Id for top blastn transcripts in NCBI Salmo salar Annotation SSncbi_Top_BLASTX_trans: Id for top blastx transcripts in NCBI Salmo salar Annotation SSncbi_Top_BLASTN_gene_name: Gene name based on top blastn hit in the NCBI Salmo salar Annotation SSncbi_Top_BLASTX_gene_name: Gene name based on top blastx hit in the NCBI Salmo salar Annotation OM_Top_BLASTN_trans: Id for top blastn transcripts in Oncorhynchus mykiss genome annotation OM_Top_BLASTX_trans: Id for top blastx transcripts in Oncorhynchus mykiss genome annotation SalmoBase_Top_BLASTN_trans: Id for top blastn transcripts in SalmoBase Salmo salar Annotation SalmoBase_Top_BLASTX_trans: Id for top blastx transcripts in SalmoBase Salmo salar Annotation SalmoBase_Top_BLASTN_gene_name: Gene name based on top blastn hit in the SalmoBase Salmo salar Annotation SalmoBase_Top_BLASTX_gene_name: Gene name based on top blastx hit in the SalmoBase Salmo salar Annotation Dataset Arctic charr Arctic Iceland Salmo salar DataCite Metadata Store (German National Library of Science and Technology) Arctic |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Developmental Biology 60305 Evolution of Developmental Systems FOS Biological sciences Evolutionary Biology 60204 Freshwater Ecology 60405 Gene Expression incl. Microarray and other genome-wide approaches |
spellingShingle |
Developmental Biology 60305 Evolution of Developmental Systems FOS Biological sciences Evolutionary Biology 60204 Freshwater Ecology 60405 Gene Expression incl. Microarray and other genome-wide approaches Guðbrandsson, Jóhannes Annotation of de novo assembly from Arctic charr in Lake Thingvallavatn, Iceland |
topic_facet |
Developmental Biology 60305 Evolution of Developmental Systems FOS Biological sciences Evolutionary Biology 60204 Freshwater Ecology 60405 Gene Expression incl. Microarray and other genome-wide approaches |
description |
Tab-delimited text file with detailed annotation of all the filtered transcripts in the Trinity assembly. gene_id: Trinity gene identification code transcript_id: Trinity transcript identification code sprot_Top_BLASTX_hit: Top blastx hit from the SwissProt database TrEMBL_Top_BLASTX_hit: Top blastx hit from the TrEMBL database RNAMMER: ribosomal RNA prediction prot_id: Id for protein prediction prot_coords: Coordinates for predicted proteins sprot_Top_BLASTP_hit: Top blastp hit for predicted proteins from the SwissProt database TrEMBL_Top_BLASTP_hit: Top blastp hit for predicted proteins from the TrEMBL database Pfam: Protein domain prediction from Pfam SignalP: Prediction of signal peptides TmHMM: Prediction for transmembrane domains eggnog: Annotation to the eggNOG database gene_ontology_blast: Gene ontology categories based on blast results from SwissProt and TrEMBL gene_ontology_pfam: Gene ontology based on Pfam protein domains SSncbi_Top_BLASTN_trans: Id for top blastn transcripts in NCBI Salmo salar Annotation SSncbi_Top_BLASTX_trans: Id for top blastx transcripts in NCBI Salmo salar Annotation SSncbi_Top_BLASTN_gene_name: Gene name based on top blastn hit in the NCBI Salmo salar Annotation SSncbi_Top_BLASTX_gene_name: Gene name based on top blastx hit in the NCBI Salmo salar Annotation OM_Top_BLASTN_trans: Id for top blastn transcripts in Oncorhynchus mykiss genome annotation OM_Top_BLASTX_trans: Id for top blastx transcripts in Oncorhynchus mykiss genome annotation SalmoBase_Top_BLASTN_trans: Id for top blastn transcripts in SalmoBase Salmo salar Annotation SalmoBase_Top_BLASTX_trans: Id for top blastx transcripts in SalmoBase Salmo salar Annotation SalmoBase_Top_BLASTN_gene_name: Gene name based on top blastn hit in the SalmoBase Salmo salar Annotation SalmoBase_Top_BLASTX_gene_name: Gene name based on top blastx hit in the SalmoBase Salmo salar Annotation |
format |
Dataset |
author |
Guðbrandsson, Jóhannes |
author_facet |
Guðbrandsson, Jóhannes |
author_sort |
Guðbrandsson, Jóhannes |
title |
Annotation of de novo assembly from Arctic charr in Lake Thingvallavatn, Iceland |
title_short |
Annotation of de novo assembly from Arctic charr in Lake Thingvallavatn, Iceland |
title_full |
Annotation of de novo assembly from Arctic charr in Lake Thingvallavatn, Iceland |
title_fullStr |
Annotation of de novo assembly from Arctic charr in Lake Thingvallavatn, Iceland |
title_full_unstemmed |
Annotation of de novo assembly from Arctic charr in Lake Thingvallavatn, Iceland |
title_sort |
annotation of de novo assembly from arctic charr in lake thingvallavatn, iceland |
publisher |
figshare |
publishDate |
2018 |
url |
https://dx.doi.org/10.6084/m9.figshare.5445610 https://figshare.com/articles/dataset/Annotation_of_de_novo_assembly_from_Arctic_charr_in_Lake_Thingvallavatn_Iceland/5445610 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic charr Arctic Iceland Salmo salar |
genre_facet |
Arctic charr Arctic Iceland Salmo salar |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.5445610 |
_version_ |
1766304082350309376 |