Annotation of de novo assembly from Arctic charr in Lake Thingvallavatn, Iceland

• Main Author: Guðbrandsson, Jóhannes
• Format: Dataset
• Language: unknown
• Published: figshare 2018
• Subjects: Developmental Biology; 60305 Evolution of Developmental Systems; FOS Biological sciences; Evolutionary Biology; 60204 Freshwater Ecology; 60405 Gene Expression incl. Microarray and other genome-wide approaches; Arctic; Arctic charr; Iceland; Salmo salar
• Online Access: https://dx.doi.org/10.6084/m9.figshare.5445610; https://figshare.com/articles/dataset/Annotation_of_de_novo_assembly_from_Arctic_charr_in_Lake_Thingvallavatn_Iceland/5445610

Tab-delimited text file with detailed annotation of all the filtered transcripts in the Trinity assembly. gene_id: Trinity gene identification code transcript_id: Trinity transcript identification code sprot_Top_BLASTX_hit: Top blastx hit from the SwissProt database TrEMBL_Top_BLASTX_hit: Top blastx hit from the TrEMBL database RNAMMER: ribosomal RNA prediction prot_id: Id for protein prediction prot_coords: Coordinates for predicted proteins sprot_Top_BLASTP_hit: Top blastp hit for predicted proteins from the SwissProt database TrEMBL_Top_BLASTP_hit: Top blastp hit for predicted proteins from the TrEMBL database Pfam: Protein domain prediction from Pfam SignalP: Prediction of signal peptides TmHMM: Prediction for transmembrane domains eggnog: Annotation to the eggNOG database gene_ontology_blast: Gene ontology categories based on blast results from SwissProt and TrEMBL gene_ontology_pfam: Gene ontology based on Pfam protein domains SSncbi_Top_BLASTN_trans: Id for top blastn transcripts in NCBI Salmo salar Annotation SSncbi_Top_BLASTX_trans: Id for top blastx transcripts in NCBI Salmo salar Annotation SSncbi_Top_BLASTN_gene_name: Gene name based on top blastn hit in the NCBI Salmo salar Annotation SSncbi_Top_BLASTX_gene_name: Gene name based on top blastx hit in the NCBI Salmo salar Annotation OM_Top_BLASTN_trans: Id for top blastn transcripts in Oncorhynchus mykiss genome annotation OM_Top_BLASTX_trans: Id for top blastx transcripts in Oncorhynchus mykiss genome annotation SalmoBase_Top_BLASTN_trans: Id for top blastn transcripts in SalmoBase Salmo salar Annotation SalmoBase_Top_BLASTX_trans: Id for top blastx transcripts in SalmoBase Salmo salar Annotation SalmoBase_Top_BLASTN_gene_name: Gene name based on top blastn hit in the SalmoBase Salmo salar Annotation SalmoBase_Top_BLASTX_gene_name: Gene name based on top blastx hit in the SalmoBase Salmo salar Annotation