Transcript and genome assemblies of Atlantic cod

NEWB454: An assembly based on 454 sequencing reads and sequenced BAC-ends. Assembled with Newbler 3.0. CA454ILM: An assembly based on Illumina and 454 sequencing reads. Assembled with Celera Assembler. CA454PB: An assembly based on Illumina, 454 and PacBio sequencing reads. Assembled with Celera Ass...

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Bibliographic Details
Main Authors: Tørresen, Ole K., Nederbragt, Lex
Format: Dataset
Language:unknown
Published: figshare 2016
Subjects:
60102 Bioinformatics
FOS Computer and information sciences
atlantic cod
Online Access:https://dx.doi.org/10.6084/m9.figshare.3408247.v1
https://figshare.com/articles/dataset/Transcript_and_genome_assemblies_of_Atlantic_cod/3408247/1
Description
Summary:NEWB454: An assembly based on 454 sequencing reads and sequenced BAC-ends. Assembled with Newbler 3.0. CA454ILM: An assembly based on Illumina and 454 sequencing reads. Assembled with Celera Assembler. CA454PB: An assembly based on Illumina, 454 and PacBio sequencing reads. Assembled with Celera Assembler. ALPILM: An assembly based on Illumina reads. Assembled with ALLPATHS-LG. gadMor2: An assembly reconciliation of NEWB454, ALPILM, CA454PB, CA454ILM put into linkage groups. trinity_cod_rna: A Trinity assembly of Illumina RNA reads from 10.1016/j.redox.2015.06.003. newbler_cod_rna: A Newbler assembly of 454 and Sanger reads from 10.1038/nature10342 and Sanger reads from 10.1186/1471-2164-13-443. isoseq_cod_rna: A IsoSeq clustering of PacBio RNA reads.

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