Additional file 1 of Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster ...
Additional file 1: Supplementary text S1. Table S1. Basic information of 154 MAGs of the RCA cluster. Table S2. Basic sequencing and genomic information of 87 analysed RCA MAGs/genomes (82 MAGs and 5 genomes from isolates) and locations where the metagenomic samples and isolates were collected. Tabl...
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Online Access: | https://dx.doi.org/10.6084/m9.figshare.24634512.v1 https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Metagenome-assembled_genomes_reveal_greatly_expanded_taxonomic_and_functional_diversification_of_the_abundant_marine_Roseobacter_RCA_cluster/24634512/1 |
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ftdatacite:10.6084/m9.figshare.24634512.v1 2023-12-31T10:23:18+01:00 Additional file 1 of Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster ... Liu, Yanting Brinkhoff, Thorsten Berger, Martine Poehlein, Anja Voget, Sonja Paoli, Lucas Sunagawa, Shinichi Amann, Rudolf Simon, Meinhard 2023 https://dx.doi.org/10.6084/m9.figshare.24634512.v1 https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Metagenome-assembled_genomes_reveal_greatly_expanded_taxonomic_and_functional_diversification_of_the_abundant_marine_Roseobacter_RCA_cluster/24634512/1 unknown figshare https://dx.doi.org/10.6084/m9.figshare.24634512 https://dx.doi.org/10.3389/fmicb.2021.683109 https://dx.doi.org/10.1038/nature02272 https://dx.doi.org/10.1038/ismej.2010.87 https://dx.doi.org/10.1111/j.1462-2920.2009.01942.x https://dx.doi.org/10.1111/1574-6941.12230 https://dx.doi.org/10.1038/ismej.2014.134 https://dx.doi.org/10.1111/j.1462-2920.2007.01497.x https://dx.doi.org/10.1128/aem.03678-15 https://dx.doi.org/10.3354/ame047045 https://dx.doi.org/10.1038/ismej.2015.105 https://dx.doi.org/10.3389/fmicb.2017.01771 https://dx.doi.org/10.1111/1462-2920.14383 https://dx.doi.org/10.3389/fmars.2021.764383 https://dx.doi.org/10.3389/fmicb.2015.00805 https://dx.doi.org/10.1126/science.1218344 https://dx.doi.org/10.1128/msystems.00494-19 https://dx.doi.org/10.1007/s00203-009-0535-2 https://dx.doi.org/10.1128/mmbr.00020-14 https://dx.doi.org/10.1128/aem.02191-07 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Genetics FOS Biological sciences Evolutionary Biology Dataset dataset 2023 ftdatacite https://doi.org/10.6084/m9.figshare.24634512.v110.6084/m9.figshare.2463451210.3389/fmicb.2021.68310910.1038/nature0227210.1038/ismej.2010.8710.1111/j.1462-2920.2009.01942.x10.1111/1574-6941.1223010.1038/ismej.2014.13410.1111/j.1462-2920.2007.01497.x10.112 2023-12-01T11:50:31Z Additional file 1: Supplementary text S1. Table S1. Basic information of 154 MAGs of the RCA cluster. Table S2. Basic sequencing and genomic information of 87 analysed RCA MAGs/genomes (82 MAGs and 5 genomes from isolates) and locations where the metagenomic samples and isolates were collected. Table S3. Metadata for metagenomic data used to estimate the proportion of the RCA cluster and 10 of the 13 RCA species. Table S4. Metadata for metatranscriptomic data used to estimate the proportion of the RCA cluster and 10 of the 13 RCA species. Table S5. Genome data of Southern Ocean SAG [21]. Table S6. Annotation of genes encoded on PGC-containing extrachromosomal replicons of two Nereidia strains. Table S6. The incomplete prophage in the Rhodobacteraceae bacterium IMCC1909. Table S7. The GC content of genomes and PR genes in the RCA cluster. Table S8. Annotation of genes encoded on PGC-containing extrachromosomal replicons of two Nereidia strains. Figure S1. The variation of the genome size, GC content and CDS ... Dataset Southern Ocean DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Genetics FOS Biological sciences Evolutionary Biology |
spellingShingle |
Genetics FOS Biological sciences Evolutionary Biology Liu, Yanting Brinkhoff, Thorsten Berger, Martine Poehlein, Anja Voget, Sonja Paoli, Lucas Sunagawa, Shinichi Amann, Rudolf Simon, Meinhard Additional file 1 of Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster ... |
topic_facet |
Genetics FOS Biological sciences Evolutionary Biology |
description |
Additional file 1: Supplementary text S1. Table S1. Basic information of 154 MAGs of the RCA cluster. Table S2. Basic sequencing and genomic information of 87 analysed RCA MAGs/genomes (82 MAGs and 5 genomes from isolates) and locations where the metagenomic samples and isolates were collected. Table S3. Metadata for metagenomic data used to estimate the proportion of the RCA cluster and 10 of the 13 RCA species. Table S4. Metadata for metatranscriptomic data used to estimate the proportion of the RCA cluster and 10 of the 13 RCA species. Table S5. Genome data of Southern Ocean SAG [21]. Table S6. Annotation of genes encoded on PGC-containing extrachromosomal replicons of two Nereidia strains. Table S6. The incomplete prophage in the Rhodobacteraceae bacterium IMCC1909. Table S7. The GC content of genomes and PR genes in the RCA cluster. Table S8. Annotation of genes encoded on PGC-containing extrachromosomal replicons of two Nereidia strains. Figure S1. The variation of the genome size, GC content and CDS ... |
format |
Dataset |
author |
Liu, Yanting Brinkhoff, Thorsten Berger, Martine Poehlein, Anja Voget, Sonja Paoli, Lucas Sunagawa, Shinichi Amann, Rudolf Simon, Meinhard |
author_facet |
Liu, Yanting Brinkhoff, Thorsten Berger, Martine Poehlein, Anja Voget, Sonja Paoli, Lucas Sunagawa, Shinichi Amann, Rudolf Simon, Meinhard |
author_sort |
Liu, Yanting |
title |
Additional file 1 of Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster ... |
title_short |
Additional file 1 of Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster ... |
title_full |
Additional file 1 of Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster ... |
title_fullStr |
Additional file 1 of Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster ... |
title_full_unstemmed |
Additional file 1 of Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster ... |
title_sort |
additional file 1 of metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine roseobacter rca cluster ... |
publisher |
figshare |
publishDate |
2023 |
url |
https://dx.doi.org/10.6084/m9.figshare.24634512.v1 https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Metagenome-assembled_genomes_reveal_greatly_expanded_taxonomic_and_functional_diversification_of_the_abundant_marine_Roseobacter_RCA_cluster/24634512/1 |
genre |
Southern Ocean |
genre_facet |
Southern Ocean |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.24634512 https://dx.doi.org/10.3389/fmicb.2021.683109 https://dx.doi.org/10.1038/nature02272 https://dx.doi.org/10.1038/ismej.2010.87 https://dx.doi.org/10.1111/j.1462-2920.2009.01942.x https://dx.doi.org/10.1111/1574-6941.12230 https://dx.doi.org/10.1038/ismej.2014.134 https://dx.doi.org/10.1111/j.1462-2920.2007.01497.x https://dx.doi.org/10.1128/aem.03678-15 https://dx.doi.org/10.3354/ame047045 https://dx.doi.org/10.1038/ismej.2015.105 https://dx.doi.org/10.3389/fmicb.2017.01771 https://dx.doi.org/10.1111/1462-2920.14383 https://dx.doi.org/10.3389/fmars.2021.764383 https://dx.doi.org/10.3389/fmicb.2015.00805 https://dx.doi.org/10.1126/science.1218344 https://dx.doi.org/10.1128/msystems.00494-19 https://dx.doi.org/10.1007/s00203-009-0535-2 https://dx.doi.org/10.1128/mmbr.00020-14 https://dx.doi.org/10.1128/aem.02191-07 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.6084/m9.figshare.24634512.v110.6084/m9.figshare.2463451210.3389/fmicb.2021.68310910.1038/nature0227210.1038/ismej.2010.8710.1111/j.1462-2920.2009.01942.x10.1111/1574-6941.1223010.1038/ismej.2014.13410.1111/j.1462-2920.2007.01497.x10.112 |
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