Additional file 5 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean ...

Additional file 5: Supplementary Figure 5. Heatmap of shared KEGG transporter proteins. All metatranscriptomes are shown in triplicates. Zscaling of normalized transcript counts by rows and Euclidian clustering by row and column. The presence of proteins in metaproteomes is defined by their presence...

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Main Authors: Debeljak, Pavla, Bayer, Barbara, Sun, Ying, Herndl, Gerhard J., Obernosterer, Ingrid
Format: Text
Language:unknown
Published: figshare 2023
Subjects:
Online Access:https://dx.doi.org/10.6084/m9.figshare.23993331
https://springernature.figshare.com/articles/journal_contribution/Additional_file_5_of_Seasonal_patterns_in_microbial_carbon_and_iron_transporter_expression_in_the_Southern_Ocean/23993331
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spelling ftdatacite:10.6084/m9.figshare.23993331 2023-10-01T03:59:35+02:00 Additional file 5 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean ... Debeljak, Pavla Bayer, Barbara Sun, Ying Herndl, Gerhard J. Obernosterer, Ingrid 2023 https://dx.doi.org/10.6084/m9.figshare.23993331 https://springernature.figshare.com/articles/journal_contribution/Additional_file_5_of_Seasonal_patterns_in_microbial_carbon_and_iron_transporter_expression_in_the_Southern_Ocean/23993331 unknown figshare https://dx.doi.org/10.3354/ame030019 https://dx.doi.org/10.1016/b978-0-12-405940-5.00003-0 https://dx.doi.org/10.5670/oceanog.2009.109 https://dx.doi.org/10.1016/j.marchem.2012.10.004 https://dx.doi.org/10.1016/j.gca.2005.02.027 https://dx.doi.org/10.1080/713848382 https://dx.doi.org/10.3389/fmicb.2012.00069 https://dx.doi.org/10.1016/j.marchem.2014.01.012 https://dx.doi.org/10.1016/j.gca.2013.11.009 https://dx.doi.org/10.1002/2014gl062663 https://dx.doi.org/10.1073/pnas.1708779115 https://dx.doi.org/10.1038/s41396-021-00928-8 https://dx.doi.org/10.1126/sciadv.aaz4354 https://dx.doi.org/10.1038/ismej.2012.96 https://dx.doi.org/10.1073/pnas.1010732107 https://dx.doi.org/10.1073/pnas.1413137112 https://dx.doi.org/10.1111/j.1462-2920.2011.02539.x https://dx.doi.org/10.1128/aem.03128-15 https://dx.doi.org/10.1111/1462-2920.14621 https://dx.doi.org/10.1038/s41396-021-00973-3 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Microbiology FOS Biological sciences Oceanography FOS Earth and related environmental sciences ScholarlyArticle article-journal Journal contribution Text 2023 ftdatacite https://doi.org/10.6084/m9.figshare.2399333110.3354/ame03001910.1016/b978-0-12-405940-5.00003-010.5670/oceanog.2009.10910.1016/j.marchem.2012.10.00410.1016/j.gca.2005.02.02710.1080/71384838210.3389/fmicb.2012.0006910.1016/j.marchem.2014.01.01210.1016/j.gc 2023-09-04T14:25:54Z Additional file 5: Supplementary Figure 5. Heatmap of shared KEGG transporter proteins. All metatranscriptomes are shown in triplicates. Zscaling of normalized transcript counts by rows and Euclidian clustering by row and column. The presence of proteins in metaproteomes is defined by their presence in one duplicate. Transporter types are indicated by different colors: ABC – ATP-binding cassette transporter complex, AMT/NPP – Ammonium Channel Transporter/Nitrate, Nitrate Porter, CUT – Carbohydrate Uptake Transporter, OMP – Outer Membrane Protein, OMR – Outer Membrane Receptor, SSS – Solute Sodium Symporter, TRAP-T - Tripartite ATP-independent periplasmic transporters, TTT – Tripartite Tricarboxylate Transporter. ... Text Southern Ocean DataCite Metadata Store (German National Library of Science and Technology) Southern Ocean
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Microbiology
FOS Biological sciences
Oceanography
FOS Earth and related environmental sciences
spellingShingle Microbiology
FOS Biological sciences
Oceanography
FOS Earth and related environmental sciences
Debeljak, Pavla
Bayer, Barbara
Sun, Ying
Herndl, Gerhard J.
Obernosterer, Ingrid
Additional file 5 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean ...
topic_facet Microbiology
FOS Biological sciences
Oceanography
FOS Earth and related environmental sciences
description Additional file 5: Supplementary Figure 5. Heatmap of shared KEGG transporter proteins. All metatranscriptomes are shown in triplicates. Zscaling of normalized transcript counts by rows and Euclidian clustering by row and column. The presence of proteins in metaproteomes is defined by their presence in one duplicate. Transporter types are indicated by different colors: ABC – ATP-binding cassette transporter complex, AMT/NPP – Ammonium Channel Transporter/Nitrate, Nitrate Porter, CUT – Carbohydrate Uptake Transporter, OMP – Outer Membrane Protein, OMR – Outer Membrane Receptor, SSS – Solute Sodium Symporter, TRAP-T - Tripartite ATP-independent periplasmic transporters, TTT – Tripartite Tricarboxylate Transporter. ...
format Text
author Debeljak, Pavla
Bayer, Barbara
Sun, Ying
Herndl, Gerhard J.
Obernosterer, Ingrid
author_facet Debeljak, Pavla
Bayer, Barbara
Sun, Ying
Herndl, Gerhard J.
Obernosterer, Ingrid
author_sort Debeljak, Pavla
title Additional file 5 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean ...
title_short Additional file 5 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean ...
title_full Additional file 5 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean ...
title_fullStr Additional file 5 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean ...
title_full_unstemmed Additional file 5 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean ...
title_sort additional file 5 of seasonal patterns in microbial carbon and iron transporter expression in the southern ocean ...
publisher figshare
publishDate 2023
url https://dx.doi.org/10.6084/m9.figshare.23993331
https://springernature.figshare.com/articles/journal_contribution/Additional_file_5_of_Seasonal_patterns_in_microbial_carbon_and_iron_transporter_expression_in_the_Southern_Ocean/23993331
geographic Southern Ocean
geographic_facet Southern Ocean
genre Southern Ocean
genre_facet Southern Ocean
op_relation https://dx.doi.org/10.3354/ame030019
https://dx.doi.org/10.1016/b978-0-12-405940-5.00003-0
https://dx.doi.org/10.5670/oceanog.2009.109
https://dx.doi.org/10.1016/j.marchem.2012.10.004
https://dx.doi.org/10.1016/j.gca.2005.02.027
https://dx.doi.org/10.1080/713848382
https://dx.doi.org/10.3389/fmicb.2012.00069
https://dx.doi.org/10.1016/j.marchem.2014.01.012
https://dx.doi.org/10.1016/j.gca.2013.11.009
https://dx.doi.org/10.1002/2014gl062663
https://dx.doi.org/10.1073/pnas.1708779115
https://dx.doi.org/10.1038/s41396-021-00928-8
https://dx.doi.org/10.1126/sciadv.aaz4354
https://dx.doi.org/10.1038/ismej.2012.96
https://dx.doi.org/10.1073/pnas.1010732107
https://dx.doi.org/10.1073/pnas.1413137112
https://dx.doi.org/10.1111/j.1462-2920.2011.02539.x
https://dx.doi.org/10.1128/aem.03128-15
https://dx.doi.org/10.1111/1462-2920.14621
https://dx.doi.org/10.1038/s41396-021-00973-3
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.6084/m9.figshare.2399333110.3354/ame03001910.1016/b978-0-12-405940-5.00003-010.5670/oceanog.2009.10910.1016/j.marchem.2012.10.00410.1016/j.gca.2005.02.02710.1080/71384838210.3389/fmicb.2012.0006910.1016/j.marchem.2014.01.01210.1016/j.gc
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