Additional file 2 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean ...

Additional file 2: Supplementary Figure 2. Bioinformatic pipeline for the analysis of all three ‘omics’ levels. A. Metagenomic assembly (individual and Co-Assembly) and binning B. Construction of Ocean protein database from metagenomic assemblies C. Metatranscriptomic mapping to metagenomes after ex...

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Bibliographic Details
Main Authors: Debeljak, Pavla, Bayer, Barbara, Sun, Ying, Herndl, Gerhard J., Obernosterer, Ingrid
Format: Text
Language:unknown
Published: figshare 2023
Subjects:
Microbiology
FOS Biological sciences
Oceanography
FOS Earth and related environmental sciences
Southern Ocean
Online Access:https://dx.doi.org/10.6084/m9.figshare.23993322
https://springernature.figshare.com/articles/journal_contribution/Additional_file_2_of_Seasonal_patterns_in_microbial_carbon_and_iron_transporter_expression_in_the_Southern_Ocean/23993322
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Summary:Additional file 2: Supplementary Figure 2. Bioinformatic pipeline for the analysis of all three ‘omics’ levels. A. Metagenomic assembly (individual and Co-Assembly) and binning B. Construction of Ocean protein database from metagenomic assemblies C. Metatranscriptomic mapping to metagenomes after extraction of mRNA with SortMeRNA D. Metaproteomic analysis with metagenomic database and annotation in eggNOG and KEGG. ...

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