An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster ...
Data inputs for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster Crassostrea gigas ". Includes: Data from Sutherland et al. 2020 , not originally uploaded and uploaded with permission from primary author:- populations_single_snp_HWE.raw (plink...
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Online Access: | https://dx.doi.org/10.6084/m9.figshare.23646471.v1 https://figshare.com/articles/dataset/An_amplicon_panel_for_high-throughput_and_low-cost_genotyping_of_Pacific_oyster/23646471/1 |
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ftdatacite:10.6084/m9.figshare.23646471.v1 2023-10-01T03:55:32+02:00 An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster ... Sutherland, Ben Thompson, Neil Gujjula, Krishna Reddy carrasco, claudio Chadaram, Srinivas Chan, Amy Suttle, Curtis A. Green, Tim 2023 https://dx.doi.org/10.6084/m9.figshare.23646471.v1 https://figshare.com/articles/dataset/An_amplicon_panel_for_high-throughput_and_low-cost_genotyping_of_Pacific_oyster/23646471/1 unknown figshare https://dx.doi.org/10.6084/m9.figshare.23646471 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Genomics Dataset dataset 2023 ftdatacite https://doi.org/10.6084/m9.figshare.23646471.v110.6084/m9.figshare.23646471 2023-09-04T14:49:54Z Data inputs for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster Crassostrea gigas ". Includes: Data from Sutherland et al. 2020 , not originally uploaded and uploaded with permission from primary author:- populations_single_snp_HWE.raw (plink format, single-SNP per locus filtered output from Stacks populations module)- populations.snps.vcf (as above, but VCF format) New data , multilocus genotypes from the pilot study from the present analysis:- R_2022_08_04_S5XL.xls (initial run samples using Cgig_v.1.0 amplicon panel)- R_2022_10_07_S5XL.xls (second run using Cgig_v.1.0 amplicon panel)- my_data_ind-to-pop_annot (tab-delim text file interp of populations; note: samples 1601-1608 are cultured samples from China, not wild samples, and this is dealt with in the analysis script) ... Dataset Crassostrea gigas Pacific oyster DataCite Metadata Store (German National Library of Science and Technology) Pacific Sutherland ENVELOPE(168.467,168.467,-77.500,-77.500) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Genomics |
spellingShingle |
Genomics Sutherland, Ben Thompson, Neil Gujjula, Krishna Reddy carrasco, claudio Chadaram, Srinivas Chan, Amy Suttle, Curtis A. Green, Tim An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster ... |
topic_facet |
Genomics |
description |
Data inputs for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster Crassostrea gigas ". Includes: Data from Sutherland et al. 2020 , not originally uploaded and uploaded with permission from primary author:- populations_single_snp_HWE.raw (plink format, single-SNP per locus filtered output from Stacks populations module)- populations.snps.vcf (as above, but VCF format) New data , multilocus genotypes from the pilot study from the present analysis:- R_2022_08_04_S5XL.xls (initial run samples using Cgig_v.1.0 amplicon panel)- R_2022_10_07_S5XL.xls (second run using Cgig_v.1.0 amplicon panel)- my_data_ind-to-pop_annot (tab-delim text file interp of populations; note: samples 1601-1608 are cultured samples from China, not wild samples, and this is dealt with in the analysis script) ... |
format |
Dataset |
author |
Sutherland, Ben Thompson, Neil Gujjula, Krishna Reddy carrasco, claudio Chadaram, Srinivas Chan, Amy Suttle, Curtis A. Green, Tim |
author_facet |
Sutherland, Ben Thompson, Neil Gujjula, Krishna Reddy carrasco, claudio Chadaram, Srinivas Chan, Amy Suttle, Curtis A. Green, Tim |
author_sort |
Sutherland, Ben |
title |
An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster ... |
title_short |
An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster ... |
title_full |
An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster ... |
title_fullStr |
An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster ... |
title_full_unstemmed |
An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster ... |
title_sort |
amplicon panel for high-throughput and low-cost genotyping of pacific oyster ... |
publisher |
figshare |
publishDate |
2023 |
url |
https://dx.doi.org/10.6084/m9.figshare.23646471.v1 https://figshare.com/articles/dataset/An_amplicon_panel_for_high-throughput_and_low-cost_genotyping_of_Pacific_oyster/23646471/1 |
long_lat |
ENVELOPE(168.467,168.467,-77.500,-77.500) |
geographic |
Pacific Sutherland |
geographic_facet |
Pacific Sutherland |
genre |
Crassostrea gigas Pacific oyster |
genre_facet |
Crassostrea gigas Pacific oyster |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.23646471 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.6084/m9.figshare.23646471.v110.6084/m9.figshare.23646471 |
_version_ |
1778524082380210176 |