An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster ...

Data inputs for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster Crassostrea gigas ". Includes: Data from Sutherland et al. 2020 , not originally uploaded and uploaded with permission from primary author:- populations_single_snp_HWE.raw (plink...

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Bibliographic Details
Main Authors: Sutherland, Ben, Thompson, Neil, Gujjula, Krishna Reddy, carrasco, claudio, Chadaram, Srinivas, Chan, Amy, Suttle, Curtis A., Green, Tim
Format: Dataset
Language:unknown
Published: figshare 2023
Subjects:
Genomics
Pacific
Sutherland
Crassostrea gigas
Pacific oyster
Online Access:https://dx.doi.org/10.6084/m9.figshare.23646471.v1
https://figshare.com/articles/dataset/An_amplicon_panel_for_high-throughput_and_low-cost_genotyping_of_Pacific_oyster/23646471/1
Description
Summary:Data inputs for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster Crassostrea gigas ". Includes: Data from Sutherland et al. 2020 , not originally uploaded and uploaded with permission from primary author:- populations_single_snp_HWE.raw (plink format, single-SNP per locus filtered output from Stacks populations module)- populations.snps.vcf (as above, but VCF format) New data , multilocus genotypes from the pilot study from the present analysis:- R_2022_08_04_S5XL.xls (initial run samples using Cgig_v.1.0 amplicon panel)- R_2022_10_07_S5XL.xls (second run using Cgig_v.1.0 amplicon panel)- my_data_ind-to-pop_annot (tab-delim text file interp of populations; note: samples 1601-1608 are cultured samples from China, not wild samples, and this is dealt with in the analysis script) ...

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