An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster ...
Data inputs for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster Crassostrea gigas ". Includes: Data from Sutherland et al. 2020 , not originally uploaded and uploaded with permission from primary author:- populations_single_snp_HWE.raw (plink...
Main Authors: | , , , , , , , |
---|---|
Format: | Dataset |
Language: | unknown |
Published: |
figshare
2023
|
Subjects: | |
Online Access: | https://dx.doi.org/10.6084/m9.figshare.23646471.v1 https://figshare.com/articles/dataset/An_amplicon_panel_for_high-throughput_and_low-cost_genotyping_of_Pacific_oyster/23646471/1 |
Summary: | Data inputs for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster Crassostrea gigas ". Includes: Data from Sutherland et al. 2020 , not originally uploaded and uploaded with permission from primary author:- populations_single_snp_HWE.raw (plink format, single-SNP per locus filtered output from Stacks populations module)- populations.snps.vcf (as above, but VCF format) New data , multilocus genotypes from the pilot study from the present analysis:- R_2022_08_04_S5XL.xls (initial run samples using Cgig_v.1.0 amplicon panel)- R_2022_10_07_S5XL.xls (second run using Cgig_v.1.0 amplicon panel)- my_data_ind-to-pop_annot (tab-delim text file interp of populations; note: samples 1601-1608 are cultured samples from China, not wild samples, and this is dealt with in the analysis script) ... |
---|