Additional file 1 of Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes ...
Additional file 1: Figure S1. Estimation of the rank for the NMF analysis of the EC abundance matrices annotated from metagenomes (top panels) and metatranscriptomes (bottom panels). Left panels: evolution of various parameters as a function of the rank used in the NMF analysis. Cophenetic correlati...
| Main Authors: | , , , |
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| Format: | Dataset |
| Language: | unknown |
| Published: |
figshare
2023
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| Subjects: | |
| Online Access: | https://dx.doi.org/10.6084/m9.figshare.22615279.v1 https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Degradation_pathways_for_organic_matter_of_terrestrial_origin_are_widespread_and_expressed_in_Arctic_Ocean_microbiomes/22615279/1 |
| Summary: | Additional file 1: Figure S1. Estimation of the rank for the NMF analysis of the EC abundance matrices annotated from metagenomes (top panels) and metatranscriptomes (bottom panels). Left panels: evolution of various parameters as a function of the rank used in the NMF analysis. Cophenetic correlation represents the correlation between the sample distances from the consensus matrix and the cophenetic distance between these samples when they are clustered. The rss is the residual sum of squares between the original EC abundance matrix and its estimate using the NMF algorithm. The dispersion is defined as 1-rss/Σi,j (Vi,j)2 (Vi,j are the entries of the EC abundance matrix) and estimates the fraction of variance of the EC abundance matrix explained by the NMF results. Residuals is the sum of residuals between the original EC abundance matrix and the matrix estimated using the NMF. Right panels: consensus matrices based on clustering the coefficient matrices at each of the 100 runs of the NMF analysis. The ... |
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