Additional file 1 of Population genomics of an icefish reveals mechanisms of glacier-driven adaptive radiation in Antarctic notothenioids ...
Additional file 1: Figure S1. An eagle’s view of a C. hamastus. Figure S2. Comparison of genome GC Content among 5 notothenioid species. Figure S3. Landscape of the C. hamatus genome at 100 Kb scale. Figure S4. Maximum likelihood trees reconstructed from extracted mitochondrial reads of 52 C. hamast...
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ftdatacite:10.6084/m9.figshare.21321320 2024-03-31T07:49:22+00:00 Additional file 1 of Population genomics of an icefish reveals mechanisms of glacier-driven adaptive radiation in Antarctic notothenioids ... Lu, Ying Li, Wenhao Li, Yalin Zhai, Wanying Zhou, Xuming Wu, Zhichao Jiang, Shouwen Liu, Taigang Wang, Huamin Hu, Ruiqin Zhou, Yan Zou, Jun Hu, Peng Guan, Guijun Xu, Qianghua Canário, Adelino V. M. Chen, Liangbiao 2022 https://dx.doi.org/10.6084/m9.figshare.21321320 https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Population_genomics_of_an_icefish_reveals_mechanisms_of_glacier-driven_adaptive_radiation_in_Antarctic_notothenioids/21321320 unknown figshare https://dx.doi.org/10.1029/92pa02253 https://dx.doi.org/10.1038/s41586-018-0273-1 https://dx.doi.org/10.1007/s00300-004-0667-4 https://dx.doi.org/10.1144/gsl.sp.1989.047.01.19 https://dx.doi.org/10.1073/pnas.1115169109 https://dx.doi.org/10.1016/j.tree.2005.07.010 https://dx.doi.org/10.1016/j.tree.2012.05.009 https://dx.doi.org/10.1038/s41559-019-0812-7 https://dx.doi.org/10.12688/wellcomeopenres.16012.1 https://dx.doi.org/10.1186/s13059-014-0468-1 https://dx.doi.org/10.1073/pnas.0802432105 https://dx.doi.org/10.1007/s00300-005-0019-z https://dx.doi.org/10.1016/s1055-7903%2803%2900124-6 https://dx.doi.org/10.1038/173848a0 https://dx.doi.org/10.1242/jeb.02091 https://dx.doi.org/10.1038/nature10231 https://dx.doi.org/10.1038/ng.3748 https://dx.doi.org/10.1038/20859 https://dx.doi.org/10.1038/nature02599 https://dx.doi.org/10.1016/0012-821x%2894%2990244-5 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Genetics FOS Biological sciences Text Journal contribution article-journal ScholarlyArticle 2022 ftdatacite https://doi.org/10.6084/m9.figshare.2132132010.1029/92pa0225310.1038/s41586-018-0273-110.1007/s00300-004-0667-410.1144/gsl.sp.1989.047.01.1910.1073/pnas.111516910910.1016/j.tree.2005.07.01010.1016/j.tree.2012.05.00910.1038/s41559-019-0812-710.12688/wellco 2024-03-04T13:42:16Z Additional file 1: Figure S1. An eagle’s view of a C. hamastus. Figure S2. Comparison of genome GC Content among 5 notothenioid species. Figure S3. Landscape of the C. hamatus genome at 100 Kb scale. Figure S4. Maximum likelihood trees reconstructed from extracted mitochondrial reads of 52 C. hamastus individuals together with C. myersi and C. rastrospinosus. Figure S5. The phylogeny of the re-sequenced 52 individuals with individual names shown supplementary to Fig. 1C. Figure S6. Characteristics of SNPs identified in the C. hamatus populations. Figure S7. Phylogeny tree depicts the closer relationship between RS1 and the individual of the reference genome (REF). Figure S8. Results of a parallel SNP call from the 52 individuals against an ad-hoc draft genome assembled from only the WGS sequencing reads from a ZD2 individual. Figure S9. Reconstructed phylogenetic tree of ten fishes based on the maximum likelihood method. Figure S10. The demographic histories of C. hamatus populations, RS1, RS2, ZD1, and ZD2, ... Text Antarc* Antarctic Icefish DataCite Metadata Store (German National Library of Science and Technology) Antarctic |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
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unknown |
topic |
Genetics FOS Biological sciences |
spellingShingle |
Genetics FOS Biological sciences Lu, Ying Li, Wenhao Li, Yalin Zhai, Wanying Zhou, Xuming Wu, Zhichao Jiang, Shouwen Liu, Taigang Wang, Huamin Hu, Ruiqin Zhou, Yan Zou, Jun Hu, Peng Guan, Guijun Xu, Qianghua Canário, Adelino V. M. Chen, Liangbiao Additional file 1 of Population genomics of an icefish reveals mechanisms of glacier-driven adaptive radiation in Antarctic notothenioids ... |
topic_facet |
Genetics FOS Biological sciences |
description |
Additional file 1: Figure S1. An eagle’s view of a C. hamastus. Figure S2. Comparison of genome GC Content among 5 notothenioid species. Figure S3. Landscape of the C. hamatus genome at 100 Kb scale. Figure S4. Maximum likelihood trees reconstructed from extracted mitochondrial reads of 52 C. hamastus individuals together with C. myersi and C. rastrospinosus. Figure S5. The phylogeny of the re-sequenced 52 individuals with individual names shown supplementary to Fig. 1C. Figure S6. Characteristics of SNPs identified in the C. hamatus populations. Figure S7. Phylogeny tree depicts the closer relationship between RS1 and the individual of the reference genome (REF). Figure S8. Results of a parallel SNP call from the 52 individuals against an ad-hoc draft genome assembled from only the WGS sequencing reads from a ZD2 individual. Figure S9. Reconstructed phylogenetic tree of ten fishes based on the maximum likelihood method. Figure S10. The demographic histories of C. hamatus populations, RS1, RS2, ZD1, and ZD2, ... |
format |
Text |
author |
Lu, Ying Li, Wenhao Li, Yalin Zhai, Wanying Zhou, Xuming Wu, Zhichao Jiang, Shouwen Liu, Taigang Wang, Huamin Hu, Ruiqin Zhou, Yan Zou, Jun Hu, Peng Guan, Guijun Xu, Qianghua Canário, Adelino V. M. Chen, Liangbiao |
author_facet |
Lu, Ying Li, Wenhao Li, Yalin Zhai, Wanying Zhou, Xuming Wu, Zhichao Jiang, Shouwen Liu, Taigang Wang, Huamin Hu, Ruiqin Zhou, Yan Zou, Jun Hu, Peng Guan, Guijun Xu, Qianghua Canário, Adelino V. M. Chen, Liangbiao |
author_sort |
Lu, Ying |
title |
Additional file 1 of Population genomics of an icefish reveals mechanisms of glacier-driven adaptive radiation in Antarctic notothenioids ... |
title_short |
Additional file 1 of Population genomics of an icefish reveals mechanisms of glacier-driven adaptive radiation in Antarctic notothenioids ... |
title_full |
Additional file 1 of Population genomics of an icefish reveals mechanisms of glacier-driven adaptive radiation in Antarctic notothenioids ... |
title_fullStr |
Additional file 1 of Population genomics of an icefish reveals mechanisms of glacier-driven adaptive radiation in Antarctic notothenioids ... |
title_full_unstemmed |
Additional file 1 of Population genomics of an icefish reveals mechanisms of glacier-driven adaptive radiation in Antarctic notothenioids ... |
title_sort |
additional file 1 of population genomics of an icefish reveals mechanisms of glacier-driven adaptive radiation in antarctic notothenioids ... |
publisher |
figshare |
publishDate |
2022 |
url |
https://dx.doi.org/10.6084/m9.figshare.21321320 https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Population_genomics_of_an_icefish_reveals_mechanisms_of_glacier-driven_adaptive_radiation_in_Antarctic_notothenioids/21321320 |
geographic |
Antarctic |
geographic_facet |
Antarctic |
genre |
Antarc* Antarctic Icefish |
genre_facet |
Antarc* Antarctic Icefish |
op_relation |
https://dx.doi.org/10.1029/92pa02253 https://dx.doi.org/10.1038/s41586-018-0273-1 https://dx.doi.org/10.1007/s00300-004-0667-4 https://dx.doi.org/10.1144/gsl.sp.1989.047.01.19 https://dx.doi.org/10.1073/pnas.1115169109 https://dx.doi.org/10.1016/j.tree.2005.07.010 https://dx.doi.org/10.1016/j.tree.2012.05.009 https://dx.doi.org/10.1038/s41559-019-0812-7 https://dx.doi.org/10.12688/wellcomeopenres.16012.1 https://dx.doi.org/10.1186/s13059-014-0468-1 https://dx.doi.org/10.1073/pnas.0802432105 https://dx.doi.org/10.1007/s00300-005-0019-z https://dx.doi.org/10.1016/s1055-7903%2803%2900124-6 https://dx.doi.org/10.1038/173848a0 https://dx.doi.org/10.1242/jeb.02091 https://dx.doi.org/10.1038/nature10231 https://dx.doi.org/10.1038/ng.3748 https://dx.doi.org/10.1038/20859 https://dx.doi.org/10.1038/nature02599 https://dx.doi.org/10.1016/0012-821x%2894%2990244-5 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.6084/m9.figshare.2132132010.1029/92pa0225310.1038/s41586-018-0273-110.1007/s00300-004-0667-410.1144/gsl.sp.1989.047.01.1910.1073/pnas.111516910910.1016/j.tree.2005.07.01010.1016/j.tree.2012.05.00910.1038/s41559-019-0812-710.12688/wellco |
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