Additional file 1 of Population genomics of an icefish reveals mechanisms of glacier-driven adaptive radiation in Antarctic notothenioids ...

• Main Authors: Lu, Ying, Li, Wenhao, Li, Yalin, Zhai, Wanying, Zhou, Xuming, Wu, Zhichao, Jiang, Shouwen, Liu, Taigang, Wang, Huamin, Hu, Ruiqin, Zhou, Yan, Zou, Jun, Hu, Peng, Guan, Guijun, Xu, Qianghua, Canário, Adelino V. M., Chen, Liangbiao
• Format: Text
• Language: unknown
• Published: figshare 2022
• Subjects: Genetics; FOS Biological sciences; Antarctic; Antarc*; Icefish
• Online Access: https://dx.doi.org/10.6084/m9.figshare.21321320; https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Population_genomics_of_an_icefish_reveals_mechanisms_of_glacier-driven_adaptive_radiation_in_Antarctic_notothenioids/21321320

Additional file 1: Figure S1. An eagle’s view of a C. hamastus. Figure S2. Comparison of genome GC Content among 5 notothenioid species. Figure S3. Landscape of the C. hamatus genome at 100 Kb scale. Figure S4. Maximum likelihood trees reconstructed from extracted mitochondrial reads of 52 C. hamastus individuals together with C. myersi and C. rastrospinosus. Figure S5. The phylogeny of the re-sequenced 52 individuals with individual names shown supplementary to Fig. 1C. Figure S6. Characteristics of SNPs identified in the C. hamatus populations. Figure S7. Phylogeny tree depicts the closer relationship between RS1 and the individual of the reference genome (REF). Figure S8. Results of a parallel SNP call from the 52 individuals against an ad-hoc draft genome assembled from only the WGS sequencing reads from a ZD2 individual. Figure S9. Reconstructed phylogenetic tree of ten fishes based on the maximum likelihood method. Figure S10. The demographic histories of C. hamatus populations, RS1, RS2, ZD1, and ZD2, ...