Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
Additional file 5: Table S4. OTUs prevalence analysis by sub-setting full dataset into multiple core OTUs. The table summarises the number OTUs within each subset dataset (subset by the % of samples that share OTUs) and percentage of the total number of OTUs within the full dataset (100%). This tabl...
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ftdatacite:10.6084/m9.figshare.16551234.v1 2023-05-15T15:31:48+02:00 Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities Kazlauskaite, Raminta Cheaib, Bachar Heys, Chloe Ijaz, Umer Zeeshan Connelly, Stephanie Sloan, William Russel, Julie Rubio, Laura Sweetman, John Kitts, Alex McGinnity, Philip Lyons, Philip Llewellyn, Martin 2021 https://dx.doi.org/10.6084/m9.figshare.16551234.v1 https://springernature.figshare.com/articles/dataset/Additional_file_6_of_SalmoSim_the_development_of_a_three-compartment_in_vitro_simulator_of_the_Atlantic_salmon_GI_tract_and_associated_microbial_communities/16551234/1 unknown figshare https://dx.doi.org/10.1186/s40168-021-01134-6 https://dx.doi.org/10.6084/m9.figshare.16551234 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Microbiology FOS Biological sciences Genetics dataset Dataset 2021 ftdatacite https://doi.org/10.6084/m9.figshare.16551234.v1 https://doi.org/10.1186/s40168-021-01134-6 https://doi.org/10.6084/m9.figshare.16551234 2021-11-05T12:55:41Z Additional file 5: Table S4. OTUs prevalence analysis by sub-setting full dataset into multiple core OTUs. The table summarises the number OTUs within each subset dataset (subset by the % of samples that share OTUs) and percentage of the total number of OTUs within the full dataset (100%). This table also shows the number of reads and the percentage of total reads (100%) within each of the subset datasets. Note: in the 60% subset three samples were lost as they did not retain any under that criteria OTUs: Id-val1-PC1, Id-Val2-MG4 and Id-Val2-PC1. Dataset Atlantic salmon DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Microbiology FOS Biological sciences Genetics |
spellingShingle |
Microbiology FOS Biological sciences Genetics Kazlauskaite, Raminta Cheaib, Bachar Heys, Chloe Ijaz, Umer Zeeshan Connelly, Stephanie Sloan, William Russel, Julie Rubio, Laura Sweetman, John Kitts, Alex McGinnity, Philip Lyons, Philip Llewellyn, Martin Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities |
topic_facet |
Microbiology FOS Biological sciences Genetics |
description |
Additional file 5: Table S4. OTUs prevalence analysis by sub-setting full dataset into multiple core OTUs. The table summarises the number OTUs within each subset dataset (subset by the % of samples that share OTUs) and percentage of the total number of OTUs within the full dataset (100%). This table also shows the number of reads and the percentage of total reads (100%) within each of the subset datasets. Note: in the 60% subset three samples were lost as they did not retain any under that criteria OTUs: Id-val1-PC1, Id-Val2-MG4 and Id-Val2-PC1. |
format |
Dataset |
author |
Kazlauskaite, Raminta Cheaib, Bachar Heys, Chloe Ijaz, Umer Zeeshan Connelly, Stephanie Sloan, William Russel, Julie Rubio, Laura Sweetman, John Kitts, Alex McGinnity, Philip Lyons, Philip Llewellyn, Martin |
author_facet |
Kazlauskaite, Raminta Cheaib, Bachar Heys, Chloe Ijaz, Umer Zeeshan Connelly, Stephanie Sloan, William Russel, Julie Rubio, Laura Sweetman, John Kitts, Alex McGinnity, Philip Lyons, Philip Llewellyn, Martin |
author_sort |
Kazlauskaite, Raminta |
title |
Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities |
title_short |
Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities |
title_full |
Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities |
title_fullStr |
Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities |
title_full_unstemmed |
Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities |
title_sort |
additional file 6 of salmosim: the development of a three-compartment in vitro simulator of the atlantic salmon gi tract and associated microbial communities |
publisher |
figshare |
publishDate |
2021 |
url |
https://dx.doi.org/10.6084/m9.figshare.16551234.v1 https://springernature.figshare.com/articles/dataset/Additional_file_6_of_SalmoSim_the_development_of_a_three-compartment_in_vitro_simulator_of_the_Atlantic_salmon_GI_tract_and_associated_microbial_communities/16551234/1 |
genre |
Atlantic salmon |
genre_facet |
Atlantic salmon |
op_relation |
https://dx.doi.org/10.1186/s40168-021-01134-6 https://dx.doi.org/10.6084/m9.figshare.16551234 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.16551234.v1 https://doi.org/10.1186/s40168-021-01134-6 https://doi.org/10.6084/m9.figshare.16551234 |
_version_ |
1766362315312070656 |