Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities

Additional file 5: Table S4. OTUs prevalence analysis by sub-setting full dataset into multiple core OTUs. The table summarises the number OTUs within each subset dataset (subset by the % of samples that share OTUs) and percentage of the total number of OTUs within the full dataset (100%). This tabl...

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Main Authors: Kazlauskaite, Raminta, Cheaib, Bachar, Heys, Chloe, Ijaz, Umer Zeeshan, Connelly, Stephanie, Sloan, William, Russel, Julie, Rubio, Laura, Sweetman, John, Kitts, Alex, McGinnity, Philip, Lyons, Philip, Llewellyn, Martin
Format: Dataset
Language:unknown
Published: figshare 2021
Subjects:
Microbiology
FOS Biological sciences
Genetics
Atlantic salmon
Online Access:https://dx.doi.org/10.6084/m9.figshare.16551234.v1
https://springernature.figshare.com/articles/dataset/Additional_file_6_of_SalmoSim_the_development_of_a_three-compartment_in_vitro_simulator_of_the_Atlantic_salmon_GI_tract_and_associated_microbial_communities/16551234/1
id ftdatacite:10.6084/m9.figshare.16551234.v1
record_format openpolar
spelling ftdatacite:10.6084/m9.figshare.16551234.v1 2023-05-15T15:31:48+02:00 Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities Kazlauskaite, Raminta Cheaib, Bachar Heys, Chloe Ijaz, Umer Zeeshan Connelly, Stephanie Sloan, William Russel, Julie Rubio, Laura Sweetman, John Kitts, Alex McGinnity, Philip Lyons, Philip Llewellyn, Martin 2021 https://dx.doi.org/10.6084/m9.figshare.16551234.v1 https://springernature.figshare.com/articles/dataset/Additional_file_6_of_SalmoSim_the_development_of_a_three-compartment_in_vitro_simulator_of_the_Atlantic_salmon_GI_tract_and_associated_microbial_communities/16551234/1 unknown figshare https://dx.doi.org/10.1186/s40168-021-01134-6 https://dx.doi.org/10.6084/m9.figshare.16551234 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Microbiology FOS Biological sciences Genetics dataset Dataset 2021 ftdatacite https://doi.org/10.6084/m9.figshare.16551234.v1 https://doi.org/10.1186/s40168-021-01134-6 https://doi.org/10.6084/m9.figshare.16551234 2021-11-05T12:55:41Z Additional file 5: Table S4. OTUs prevalence analysis by sub-setting full dataset into multiple core OTUs. The table summarises the number OTUs within each subset dataset (subset by the % of samples that share OTUs) and percentage of the total number of OTUs within the full dataset (100%). This table also shows the number of reads and the percentage of total reads (100%) within each of the subset datasets. Note: in the 60% subset three samples were lost as they did not retain any under that criteria OTUs: Id-val1-PC1, Id-Val2-MG4 and Id-Val2-PC1. Dataset Atlantic salmon DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Microbiology
FOS Biological sciences
Genetics
spellingShingle Microbiology
FOS Biological sciences
Genetics
Kazlauskaite, Raminta
Cheaib, Bachar
Heys, Chloe
Ijaz, Umer Zeeshan
Connelly, Stephanie
Sloan, William
Russel, Julie
Rubio, Laura
Sweetman, John
Kitts, Alex
McGinnity, Philip
Lyons, Philip
Llewellyn, Martin
Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
topic_facet Microbiology
FOS Biological sciences
Genetics
description Additional file 5: Table S4. OTUs prevalence analysis by sub-setting full dataset into multiple core OTUs. The table summarises the number OTUs within each subset dataset (subset by the % of samples that share OTUs) and percentage of the total number of OTUs within the full dataset (100%). This table also shows the number of reads and the percentage of total reads (100%) within each of the subset datasets. Note: in the 60% subset three samples were lost as they did not retain any under that criteria OTUs: Id-val1-PC1, Id-Val2-MG4 and Id-Val2-PC1.
format Dataset
author Kazlauskaite, Raminta
Cheaib, Bachar
Heys, Chloe
Ijaz, Umer Zeeshan
Connelly, Stephanie
Sloan, William
Russel, Julie
Rubio, Laura
Sweetman, John
Kitts, Alex
McGinnity, Philip
Lyons, Philip
Llewellyn, Martin
author_facet Kazlauskaite, Raminta
Cheaib, Bachar
Heys, Chloe
Ijaz, Umer Zeeshan
Connelly, Stephanie
Sloan, William
Russel, Julie
Rubio, Laura
Sweetman, John
Kitts, Alex
McGinnity, Philip
Lyons, Philip
Llewellyn, Martin
author_sort Kazlauskaite, Raminta
title Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
title_short Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
title_full Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
title_fullStr Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
title_full_unstemmed Additional file 6 of SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
title_sort additional file 6 of salmosim: the development of a three-compartment in vitro simulator of the atlantic salmon gi tract and associated microbial communities
publisher figshare
publishDate 2021
url https://dx.doi.org/10.6084/m9.figshare.16551234.v1
https://springernature.figshare.com/articles/dataset/Additional_file_6_of_SalmoSim_the_development_of_a_three-compartment_in_vitro_simulator_of_the_Atlantic_salmon_GI_tract_and_associated_microbial_communities/16551234/1
genre Atlantic salmon
genre_facet Atlantic salmon
op_relation https://dx.doi.org/10.1186/s40168-021-01134-6
https://dx.doi.org/10.6084/m9.figshare.16551234
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.6084/m9.figshare.16551234.v1
https://doi.org/10.1186/s40168-021-01134-6
https://doi.org/10.6084/m9.figshare.16551234
_version_ 1766362315312070656

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