variants.GATK.iteration.1.Full.sorted.vcftools.biAllelicSNP.maf05.mm0.9.recode.vcf.gz
Nucleotide variants used in a publication (Title: The pink salmon genome: Uncovering the genomic consequences of a strict two-year life-cyclep { margin-bottom: 0.25cm; line-height: 115%; background: transparent }a:link { color: #000080; so-language: zxx; text-decoration: underline }). Please refer t...
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| Format: | Dataset |
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figshare
2021
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| Online Access: | https://dx.doi.org/10.6084/m9.figshare.14963739 https://figshare.com/articles/dataset/variants_GATK_iteration_1_Full_sorted_vcftools_biAllelicSNP_maf05_mm0_9_recode_vcf_gz/14963739 |
| Summary: | Nucleotide variants used in a publication (Title: The pink salmon genome: Uncovering the genomic consequences of a strict two-year life-cyclep { margin-bottom: 0.25cm; line-height: 115%; background: transparent }a:link { color: #000080; so-language: zxx; text-decoration: underline }). Please refer to this publication for the methods and sampling locations. These variants were identified from whole-genome resequencing data from 61 individuals using GATK. The genome the resequencing data was identified from is available in this repository (10.6084/m9.figshare.14963721). These variants were also mapped to various genomes using the following scripts: https://github.com/KrisChristensen/MapVCF2NewGenome |
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