Additional file 1 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ...
Additional file 1: Supplementary Fig. 1. The workflow used to construct the de novo genomes. Supplementary Fig. 2. KAT kmer analysis of China assembly. Supplementary Fig. 3. Identification of putative regulatory elements in basenji’s genome using whole-genome bisulphite sequencing. Supplementary Fig...
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ftdatacite:10.6084/m9.figshare.14227948 2024-03-31T07:52:10+00:00 Additional file 1 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... Edwards, Richard J. Field, Matt A. Ferguson, James M. Dudchenko, Olga Keilwagen, Jens Rosen, Benjamin D. Johnson, Gary S. Rice, Edward S. Hillier, La Deanna Hammond, Jillian M. Towarnicki, Samuel G. Omer, Arina Khan, Ruqayya Skvortsova, Ksenia Bogdanovic, Ozren Zammit, Robert A. Aiden, Erez Lieberman Warren, Wesley C. Ballard, J. William O. 2021 https://dx.doi.org/10.6084/m9.figshare.14227948 https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Chromosome-length_genome_assembly_and_structural_variations_of_the_primal_Basenji_dog_Canis_lupus_familiaris_genome/14227948 unknown figshare https://dx.doi.org/10.1038/ncomms16082 https://dx.doi.org/10.1086/650372 https://dx.doi.org/10.1126/science.1243650 https://dx.doi.org/10.1186/s12864-017-4318-x https://dx.doi.org/10.1038/nrg.2017.67 https://dx.doi.org/10.1371/journal.pgen.1004016 https://dx.doi.org/10.1038/s41467-020-14515-6 https://dx.doi.org/10.1038/cr.2015.147 https://dx.doi.org/10.1016/j.cub.2018.08.041 https://dx.doi.org/10.1016/j.celrep.2017.03.079 https://dx.doi.org/10.1111/j.1748-5827.1979.tb06680.x https://dx.doi.org/10.1038/nature04338 https://dx.doi.org/10.1371/journal.pone.0091172 https://dx.doi.org/10.1101/gr.083741.108 https://dx.doi.org/10.1038/s41587-019-0072-8 https://dx.doi.org/10.1073/pnas.1604560113 https://dx.doi.org/10.1101/gr.214270.116 https://dx.doi.org/10.1371/journal.pone.0112963 https://dx.doi.org/10.1016/j.cels.2018.01.001 https://dx.doi.org/10.1016/j.cell.2014.11.021 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Medicine Genetics FOS Biological sciences Evolutionary Biology Environmental Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified Text Journal contribution article-journal ScholarlyArticle 2021 ftdatacite https://doi.org/10.6084/m9.figshare.1422794810.1038/ncomms1608210.1086/65037210.1126/science.124365010.1186/s12864-017-4318-x10.1038/nrg.2017.6710.1371/journal.pgen.100401610.1038/s41467-020-14515-610.1038/cr.2015.14710.1016/j.cub.2018.08.04110.1016/j.cel 2024-03-04T13:24:14Z Additional file 1: Supplementary Fig. 1. The workflow used to construct the de novo genomes. Supplementary Fig. 2. KAT kmer analysis of China assembly. Supplementary Fig. 3. Identification of putative regulatory elements in basenji’s genome using whole-genome bisulphite sequencing. Supplementary Fig. 4. Predicted copy number of BUSCO Complete genes for three dogs based on long-read read depth. Supplementary Fig. 5. CanFam_Bas nuclear mitochondrial DNA (NUMT) coverage. Supplementary Fig. 6. Comparative short read mapping and single nucleotide variant calling for 58 dog breeds versus three reference genomes: CanFam_Bas, CanFam_GSD (GSD) and CanFam3.1 (BOX). ... Text Canis lupus DataCite Metadata Store (German National Library of Science and Technology) PLOS ONE 17 10 e0265293 |
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DataCite Metadata Store (German National Library of Science and Technology) |
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Medicine Genetics FOS Biological sciences Evolutionary Biology Environmental Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified |
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Medicine Genetics FOS Biological sciences Evolutionary Biology Environmental Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified Edwards, Richard J. Field, Matt A. Ferguson, James M. Dudchenko, Olga Keilwagen, Jens Rosen, Benjamin D. Johnson, Gary S. Rice, Edward S. Hillier, La Deanna Hammond, Jillian M. Towarnicki, Samuel G. Omer, Arina Khan, Ruqayya Skvortsova, Ksenia Bogdanovic, Ozren Zammit, Robert A. Aiden, Erez Lieberman Warren, Wesley C. Ballard, J. William O. Additional file 1 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
topic_facet |
Medicine Genetics FOS Biological sciences Evolutionary Biology Environmental Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified |
description |
Additional file 1: Supplementary Fig. 1. The workflow used to construct the de novo genomes. Supplementary Fig. 2. KAT kmer analysis of China assembly. Supplementary Fig. 3. Identification of putative regulatory elements in basenji’s genome using whole-genome bisulphite sequencing. Supplementary Fig. 4. Predicted copy number of BUSCO Complete genes for three dogs based on long-read read depth. Supplementary Fig. 5. CanFam_Bas nuclear mitochondrial DNA (NUMT) coverage. Supplementary Fig. 6. Comparative short read mapping and single nucleotide variant calling for 58 dog breeds versus three reference genomes: CanFam_Bas, CanFam_GSD (GSD) and CanFam3.1 (BOX). ... |
format |
Text |
author |
Edwards, Richard J. Field, Matt A. Ferguson, James M. Dudchenko, Olga Keilwagen, Jens Rosen, Benjamin D. Johnson, Gary S. Rice, Edward S. Hillier, La Deanna Hammond, Jillian M. Towarnicki, Samuel G. Omer, Arina Khan, Ruqayya Skvortsova, Ksenia Bogdanovic, Ozren Zammit, Robert A. Aiden, Erez Lieberman Warren, Wesley C. Ballard, J. William O. |
author_facet |
Edwards, Richard J. Field, Matt A. Ferguson, James M. Dudchenko, Olga Keilwagen, Jens Rosen, Benjamin D. Johnson, Gary S. Rice, Edward S. Hillier, La Deanna Hammond, Jillian M. Towarnicki, Samuel G. Omer, Arina Khan, Ruqayya Skvortsova, Ksenia Bogdanovic, Ozren Zammit, Robert A. Aiden, Erez Lieberman Warren, Wesley C. Ballard, J. William O. |
author_sort |
Edwards, Richard J. |
title |
Additional file 1 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
title_short |
Additional file 1 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
title_full |
Additional file 1 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
title_fullStr |
Additional file 1 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
title_full_unstemmed |
Additional file 1 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
title_sort |
additional file 1 of chromosome-length genome assembly and structural variations of the primal basenji dog (canis lupus familiaris) genome ... |
publisher |
figshare |
publishDate |
2021 |
url |
https://dx.doi.org/10.6084/m9.figshare.14227948 https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Chromosome-length_genome_assembly_and_structural_variations_of_the_primal_Basenji_dog_Canis_lupus_familiaris_genome/14227948 |
genre |
Canis lupus |
genre_facet |
Canis lupus |
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https://dx.doi.org/10.1038/ncomms16082 https://dx.doi.org/10.1086/650372 https://dx.doi.org/10.1126/science.1243650 https://dx.doi.org/10.1186/s12864-017-4318-x https://dx.doi.org/10.1038/nrg.2017.67 https://dx.doi.org/10.1371/journal.pgen.1004016 https://dx.doi.org/10.1038/s41467-020-14515-6 https://dx.doi.org/10.1038/cr.2015.147 https://dx.doi.org/10.1016/j.cub.2018.08.041 https://dx.doi.org/10.1016/j.celrep.2017.03.079 https://dx.doi.org/10.1111/j.1748-5827.1979.tb06680.x https://dx.doi.org/10.1038/nature04338 https://dx.doi.org/10.1371/journal.pone.0091172 https://dx.doi.org/10.1101/gr.083741.108 https://dx.doi.org/10.1038/s41587-019-0072-8 https://dx.doi.org/10.1073/pnas.1604560113 https://dx.doi.org/10.1101/gr.214270.116 https://dx.doi.org/10.1371/journal.pone.0112963 https://dx.doi.org/10.1016/j.cels.2018.01.001 https://dx.doi.org/10.1016/j.cell.2014.11.021 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.6084/m9.figshare.1422794810.1038/ncomms1608210.1086/65037210.1126/science.124365010.1186/s12864-017-4318-x10.1038/nrg.2017.6710.1371/journal.pgen.100401610.1038/s41467-020-14515-610.1038/cr.2015.14710.1016/j.cub.2018.08.04110.1016/j.cel |
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