Additional file 1 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ...

Additional file 1: Supplementary Fig. 1. The workflow used to construct the de novo genomes. Supplementary Fig. 2. KAT kmer analysis of China assembly. Supplementary Fig. 3. Identification of putative regulatory elements in basenji’s genome using whole-genome bisulphite sequencing. Supplementary Fig...

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Published in:PLOS ONE
Main Authors: Edwards, Richard J., Field, Matt A., Ferguson, James M., Dudchenko, Olga, Keilwagen, Jens, Rosen, Benjamin D., Johnson, Gary S., Rice, Edward S., Hillier, La Deanna, Hammond, Jillian M., Towarnicki, Samuel G., Omer, Arina, Khan, Ruqayya, Skvortsova, Ksenia, Bogdanovic, Ozren, Zammit, Robert A., Aiden, Erez Lieberman, Warren, Wesley C., Ballard, J. William O.
Format: Text
Language:unknown
Published: figshare 2021
Subjects:
Medicine
Genetics
FOS Biological sciences
Evolutionary Biology
Environmental Sciences not elsewhere classified
Ecology
Biological Sciences not elsewhere classified
Canis lupus
Online Access:https://dx.doi.org/10.6084/m9.figshare.14227948
https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Chromosome-length_genome_assembly_and_structural_variations_of_the_primal_Basenji_dog_Canis_lupus_familiaris_genome/14227948
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Summary:Additional file 1: Supplementary Fig. 1. The workflow used to construct the de novo genomes. Supplementary Fig. 2. KAT kmer analysis of China assembly. Supplementary Fig. 3. Identification of putative regulatory elements in basenji’s genome using whole-genome bisulphite sequencing. Supplementary Fig. 4. Predicted copy number of BUSCO Complete genes for three dogs based on long-read read depth. Supplementary Fig. 5. CanFam_Bas nuclear mitochondrial DNA (NUMT) coverage. Supplementary Fig. 6. Comparative short read mapping and single nucleotide variant calling for 58 dog breeds versus three reference genomes: CanFam_Bas, CanFam_GSD (GSD) and CanFam3.1 (BOX). ...

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