Micronutrient supplementation affects DNA methylation signatures in male gonads with predicted intergenerational epigenetic inheritance involving the development of embryonic cells

Three groups of Atlantic salmon were fed with graded levels of micronutrient supplementation. Gonad and liver samples were collected at final harvest stage. The samples were processed by two restriction enzymes, MspI and TaqI, for RNA-seq and RRBS. It contains the following 13 Excel files with forma...

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Bibliographic Details
Main Author: Saito, Takaya
Format: Dataset
Language:unknown
Published: figshare 2021
Subjects:
70401 Aquaculture
FOS Agriculture, forestry and fisheries
60404 Epigenetics incl. Genome Methylation and Epigenomics
FOS Biological sciences
60405 Gene Expression incl. Microarray and other genome-wide approaches
60102 Bioinformatics
FOS Computer and information sciences
Atlantic salmon
Online Access:https://dx.doi.org/10.6084/m9.figshare.14177015.v1
https://figshare.com/articles/dataset/Micronutrient_supplementation_affects_DNA_methylation_signatures_in_male_gonads_with_predicted_intergenerational_epigenetic_inheritance_involving_the_development_of_embryonic_cells/14177015/1
Description
Summary:Three groups of Atlantic salmon were fed with graded levels of micronutrient supplementation. Gonad and liver samples were collected at final harvest stage. The samples were processed by two restriction enzymes, MspI and TaqI, for RNA-seq and RRBS. It contains the following 13 Excel files with formatted and annotated RNA-seq and RRBS results. 1. DEGs for L2:L12. DEGs for L3:L1 3. DMCs and CpG sites for L2:L1 4. DMCs and CpG sites for L3:L1 5. DMCs by region for gonad L2:L1 6. DMCs by region for gonad L3:L1 7. DMGs for L2:L1 8. DMGs for L3:L1 9. DEG^DMCs for gonad10. DEG^DMCs for liver11. DEG^DMCs for G&L12. common DMCs13. common DMGs Detailed descriptions of the data are found in the Additional File 1 of Saito et al., 2021.

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