A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.
File S1: Bioinformatics methods, tools and pipelines used to generate gadMor_Celtic and other information complementing the materials and methods section can be found here. Table S1: Linkage map of gadMor_Celtic: SNPs, position in gadMor_Celtic, genetic linkage of male, female in centimorgan (cM) an...
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| Format: | Dataset |
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figshare
2020
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| Online Access: | https://dx.doi.org/10.6084/m9.figshare.10252919.v3 https://figshare.com/articles/A_nanopore_based_chromosome-level_assembly_representing_Atlantic_cod_from_the_Celtic_Sea_/10252919/3 |
| Summary: | File S1: Bioinformatics methods, tools and pipelines used to generate gadMor_Celtic and other information complementing the materials and methods section can be found here. Table S1: Linkage map of gadMor_Celtic: SNPs, position in gadMor_Celtic, genetic linkage of male, female in centimorgan (cM) and SNP flank sequence from gadMor1 (NEAC). Table S2: Predicted function of open reading frames were found with TransDecoder and homology search using blastp against zebrafish and stickleback protein databases. Figure S1: Plots showing collinearity between genetic maps for males (red) and female (blue) and the frequency of a 258bp tandem repeat structure (histogram) predicted to be related to centromeres in all 23 chromosomes. Table S3: This contains the list of genes in LGs 1, 2, 7 and 12. File S2: The putative 258bp centromere repeat sequence.gadMor_celtic_repeat_Library.fa.txt - Repeat library gadMor_Celtic.fa.txt -Genome assembly |
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