18S rRNA V9 taxonomic classifier ...
18S metabarcoding databases and naive-bayes classifier specific to the V9 region. Built from the PR2 v5.0.0 database using Qiime2 (version 2021.2). Primers used: 1391f: GTACACACCGCCCGTC EukBr: TGATCCTTCTGCAGGTTCACCTAC File Description pr2_seqs.qza |. Full length PR2 v5.0.0 sequences pr2_tax.qza | Ta...
| Main Authors: | , , |
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| Format: | Dataset |
| Language: | unknown |
| Published: |
Zenodo
2023
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| Subjects: | |
| Online Access: | https://dx.doi.org/10.5281/zenodo.8392706 https://zenodo.org/doi/10.5281/zenodo.8392706 |
| _version_ | 1821673414519160832 |
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| author | Anderson, Sean Silliman, Katherine Thompson, Luke |
| author_facet | Anderson, Sean Silliman, Katherine Thompson, Luke |
| author_sort | Anderson, Sean |
| collection | DataCite |
| description | 18S metabarcoding databases and naive-bayes classifier specific to the V9 region. Built from the PR2 v5.0.0 database using Qiime2 (version 2021.2). Primers used: 1391f: GTACACACCGCCCGTC EukBr: TGATCCTTCTGCAGGTTCACCTAC File Description pr2_seqs.qza |. Full length PR2 v5.0.0 sequences pr2_tax.qza | Taxa for PR2 v5.0.0 database refseqs_V9.qza. | Sequences for 18S V9 (primers 1391f, EukBrr), extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 (forward compatible) classifier_V9.qza | Unweighted (uniform) naive-bayes classifier for 18S V9 extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 ... : "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." ... |
| format | Dataset |
| genre | Ocean acidification |
| genre_facet | Ocean acidification |
| id | ftdatacite:10.5281/zenodo.8392706 |
| institution | Open Polar |
| language | unknown |
| op_collection_id | ftdatacite |
| op_doi | https://doi.org/10.5281/zenodo.839270610.5281/zenodo.8392705 |
| op_relation | https://dx.doi.org/10.5281/zenodo.8392705 |
| op_rights | Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
| publishDate | 2023 |
| publisher | Zenodo |
| record_format | openpolar |
| spelling | ftdatacite:10.5281/zenodo.8392706 2025-01-17T00:04:43+00:00 18S rRNA V9 taxonomic classifier ... Anderson, Sean Silliman, Katherine Thompson, Luke 2023 https://dx.doi.org/10.5281/zenodo.8392706 https://zenodo.org/doi/10.5281/zenodo.8392706 unknown Zenodo https://dx.doi.org/10.5281/zenodo.8392705 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 metabarcoding reference database 18S rRNA Dataset dataset 2023 ftdatacite https://doi.org/10.5281/zenodo.839270610.5281/zenodo.8392705 2023-12-01T11:28:11Z 18S metabarcoding databases and naive-bayes classifier specific to the V9 region. Built from the PR2 v5.0.0 database using Qiime2 (version 2021.2). Primers used: 1391f: GTACACACCGCCCGTC EukBr: TGATCCTTCTGCAGGTTCACCTAC File Description pr2_seqs.qza |. Full length PR2 v5.0.0 sequences pr2_tax.qza | Taxa for PR2 v5.0.0 database refseqs_V9.qza. | Sequences for 18S V9 (primers 1391f, EukBrr), extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 (forward compatible) classifier_V9.qza | Unweighted (uniform) naive-bayes classifier for 18S V9 extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 ... : "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." ... Dataset Ocean acidification DataCite |
| spellingShingle | metabarcoding reference database 18S rRNA Anderson, Sean Silliman, Katherine Thompson, Luke 18S rRNA V9 taxonomic classifier ... |
| title | 18S rRNA V9 taxonomic classifier ... |
| title_full | 18S rRNA V9 taxonomic classifier ... |
| title_fullStr | 18S rRNA V9 taxonomic classifier ... |
| title_full_unstemmed | 18S rRNA V9 taxonomic classifier ... |
| title_short | 18S rRNA V9 taxonomic classifier ... |
| title_sort | 18s rrna v9 taxonomic classifier ... |
| topic | metabarcoding reference database 18S rRNA |
| topic_facet | metabarcoding reference database 18S rRNA |
| url | https://dx.doi.org/10.5281/zenodo.8392706 https://zenodo.org/doi/10.5281/zenodo.8392706 |