18S rRNA V9 taxonomic classifier ...

18S metabarcoding databases and naive-bayes classifier specific to the V9 region. Built from the PR2 v5.0.0 database using Qiime2 (version 2021.2). Primers used: 1391f: GTACACACCGCCCGTC EukBr: TGATCCTTCTGCAGGTTCACCTAC File Description pr2_seqs.qza |. Full length PR2 v5.0.0 sequences pr2_tax.qza | Ta...

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Bibliographic Details
Main Authors: Anderson, Sean, Silliman, Katherine, Thompson, Luke
Format: Dataset
Language:unknown
Published: Zenodo 2023
Subjects:
metabarcoding
reference database
18S rRNA
Ocean acidification
Online Access:https://dx.doi.org/10.5281/zenodo.8392706
https://zenodo.org/doi/10.5281/zenodo.8392706
id ftdatacite:10.5281/zenodo.8392706
record_format openpolar
spelling ftdatacite:10.5281/zenodo.8392706 2023-12-31T10:21:32+01:00 18S rRNA V9 taxonomic classifier ... Anderson, Sean Silliman, Katherine Thompson, Luke 2023 https://dx.doi.org/10.5281/zenodo.8392706 https://zenodo.org/doi/10.5281/zenodo.8392706 unknown Zenodo https://dx.doi.org/10.5281/zenodo.8392705 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 metabarcoding reference database 18S rRNA Dataset dataset 2023 ftdatacite https://doi.org/10.5281/zenodo.839270610.5281/zenodo.8392705 2023-12-01T11:28:11Z 18S metabarcoding databases and naive-bayes classifier specific to the V9 region. Built from the PR2 v5.0.0 database using Qiime2 (version 2021.2). Primers used: 1391f: GTACACACCGCCCGTC EukBr: TGATCCTTCTGCAGGTTCACCTAC File Description pr2_seqs.qza |. Full length PR2 v5.0.0 sequences pr2_tax.qza | Taxa for PR2 v5.0.0 database refseqs_V9.qza. | Sequences for 18S V9 (primers 1391f, EukBrr), extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 (forward compatible) classifier_V9.qza | Unweighted (uniform) naive-bayes classifier for 18S V9 extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 ... : "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic metabarcoding
reference database
18S rRNA
spellingShingle metabarcoding
reference database
18S rRNA
Anderson, Sean
Silliman, Katherine
Thompson, Luke
18S rRNA V9 taxonomic classifier ...
topic_facet metabarcoding
reference database
18S rRNA
description 18S metabarcoding databases and naive-bayes classifier specific to the V9 region. Built from the PR2 v5.0.0 database using Qiime2 (version 2021.2). Primers used: 1391f: GTACACACCGCCCGTC EukBr: TGATCCTTCTGCAGGTTCACCTAC File Description pr2_seqs.qza |. Full length PR2 v5.0.0 sequences pr2_tax.qza | Taxa for PR2 v5.0.0 database refseqs_V9.qza. | Sequences for 18S V9 (primers 1391f, EukBrr), extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 (forward compatible) classifier_V9.qza | Unweighted (uniform) naive-bayes classifier for 18S V9 extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 ... : "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." ...
format Dataset
author Anderson, Sean
Silliman, Katherine
Thompson, Luke
author_facet Anderson, Sean
Silliman, Katherine
Thompson, Luke
author_sort Anderson, Sean
title 18S rRNA V9 taxonomic classifier ...
title_short 18S rRNA V9 taxonomic classifier ...
title_full 18S rRNA V9 taxonomic classifier ...
title_fullStr 18S rRNA V9 taxonomic classifier ...
title_full_unstemmed 18S rRNA V9 taxonomic classifier ...
title_sort 18s rrna v9 taxonomic classifier ...
publisher Zenodo
publishDate 2023
url https://dx.doi.org/10.5281/zenodo.8392706
https://zenodo.org/doi/10.5281/zenodo.8392706
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://dx.doi.org/10.5281/zenodo.8392705
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.5281/zenodo.839270610.5281/zenodo.8392705
_version_ 1786832350731042816

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