MalaMix dataset: contextual and metabarcoding data ...

1. INTRODUCTION MalaMix is a compiled metabarcoding dataset composed of 451 marine samples collected from a range of depths - from the surface (3m) to deep waters (as far down as 4800m). This dataset covers three ocean layers: the epi- (0-200m – including DCM), meso- (200-1000m) and bathypelagic (10...

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Bibliographic Details
Main Authors: Junger, Pedro C., Sarmento, Hugo, Giner, Caterina R., Mestre, Mireia, Sebastián, Marta, Moran, Xosé A. G., Arístegui, Javier, Agustí, Susana, Duarte, Carlos M., Acinas, Silvia G., Massana, Ramon, Gasol, Josep M., Logares, Ramiro
Format: Dataset
Language:English
Published: Zenodo 2023
Subjects:
Marine microbial community
16S rRNA
18S rRNA
Plankton
Ocean
Pacific
Indian
Northeast Atlantic
Online Access:https://dx.doi.org/10.5281/zenodo.8363877
https://zenodo.org/record/8363877
Description
Summary:1. INTRODUCTION MalaMix is a compiled metabarcoding dataset composed of 451 marine samples collected from a range of depths - from the surface (3m) to deep waters (as far down as 4800m). This dataset covers three ocean layers: the epi- (0-200m – including DCM), meso- (200-1000m) and bathypelagic (1000-4000m). MalaMix combines samples obtained during two oceanographic expeditions with similar sampling strategies: i) the Malaspina-2010 global expedition that produced 263 samples collected between December 2010 and July 2011 from 120 stations distributed along the tropical and subtropical portions (latitudes between 35° N and 40° S) of the Pacific, Atlantic and Indian oceans; and ii) the HotMix trans-Mediterranean cruise that produced 188 samples collected between April and May 2014 in 29 stations distributed along the whole Mediterranean Sea (from -5° W to 33° E) and the adjacent Northeast Atlantic Ocean. MalaMix comprises: a 16S-V4V5 rRNA gene ASV table (MalaMix_16S.csv); an 18S-V4 rRNA gene ASV table ...

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