EUKulele databases for Phaeocystis mapping (Krinos et al. 2023) ...
Supplementary dataset for Krinos et al. 2023, Missing microbial eukaryotes and misleading meta-omic conclusions, bioRxiv . Each zipped folder is a different database containing some subset of the Phaeocystis references used to map against the Tara Oceans metagenomes. These folders contain a combined...
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Online Access: | https://dx.doi.org/10.5281/zenodo.8269166 https://zenodo.org/record/8269166 |
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ftdatacite:10.5281/zenodo.8269166 2023-10-01T03:51:25+02:00 EUKulele databases for Phaeocystis mapping (Krinos et al. 2023) ... Krinos, Arianna Brisbin, Margaret Mars Hu, Sarah Cohen, Natalie Rynearson, Tatiana Follows, Michael Schulz, Frederik Alexander, Harriet 2023 https://dx.doi.org/10.5281/zenodo.8269166 https://zenodo.org/record/8269166 unknown Zenodo https://dx.doi.org/10.5281/zenodo.8269165 Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess protist oceanography Phaeocystis EUKulele taxonomy metaomics metagenomics Dataset dataset 2023 ftdatacite https://doi.org/10.5281/zenodo.826916610.5281/zenodo.8269165 2023-09-04T14:42:27Z Supplementary dataset for Krinos et al. 2023, Missing microbial eukaryotes and misleading meta-omic conclusions, bioRxiv . Each zipped folder is a different database containing some subset of the Phaeocystis references used to map against the Tara Oceans metagenomes. These folders contain a combined database and taxonomy table derived from other sequencing dataset resources which can be used directly with the EUKulele software. `marmmetsp_all_phaeo.tar.gz` - full database including MarRef, MMETSP (Keeling et al. 2014), and all Phaeocystis references as listed in Krinos et al. (2023) `marmmetsp_all_colonies.tar.gz` - database including MarRef, MMETSP (Keeling et al. 2014), and Phaeocystis references known to form colonies ( Phaeocystis antarctica , Phaeocystis pouchetii , Phaeocystis globosa ) `marmmetsp_all_free.tar.gz` - database including MarRef, MMETSP (Keeling et al. 2014), and Phaeocystis references known not to form colonies ( Phaeocystis rex , Phaeocystis jahnii , Phaeocystis cordata ) ... : This material is based upon work supported by the U.S. Department of Energy, Office of Science, Office of Advanced Scientific Computing Research, Department of Energy Computational Science Graduate Fellowship under Award Number DE-SC0020347 (A.I.K.). The work conducted by the US Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science user facility, is supported by the Office of Science of the US Department of Energy, operated under contract no. DE-AC02-05CH11231 (A.I.K.). M.M.B. is supported by a Simons Foundation Postdoctoral Fellowship in Marine Microbiology (award 874439). H.A. is supported by a Simons Foundation Early Career Investigator in Aquatic Microbial Ecology and Evolution Award (award 931886). ... Dataset Antarc* Antarctica DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
protist oceanography Phaeocystis EUKulele taxonomy metaomics metagenomics |
spellingShingle |
protist oceanography Phaeocystis EUKulele taxonomy metaomics metagenomics Krinos, Arianna Brisbin, Margaret Mars Hu, Sarah Cohen, Natalie Rynearson, Tatiana Follows, Michael Schulz, Frederik Alexander, Harriet EUKulele databases for Phaeocystis mapping (Krinos et al. 2023) ... |
topic_facet |
protist oceanography Phaeocystis EUKulele taxonomy metaomics metagenomics |
description |
Supplementary dataset for Krinos et al. 2023, Missing microbial eukaryotes and misleading meta-omic conclusions, bioRxiv . Each zipped folder is a different database containing some subset of the Phaeocystis references used to map against the Tara Oceans metagenomes. These folders contain a combined database and taxonomy table derived from other sequencing dataset resources which can be used directly with the EUKulele software. `marmmetsp_all_phaeo.tar.gz` - full database including MarRef, MMETSP (Keeling et al. 2014), and all Phaeocystis references as listed in Krinos et al. (2023) `marmmetsp_all_colonies.tar.gz` - database including MarRef, MMETSP (Keeling et al. 2014), and Phaeocystis references known to form colonies ( Phaeocystis antarctica , Phaeocystis pouchetii , Phaeocystis globosa ) `marmmetsp_all_free.tar.gz` - database including MarRef, MMETSP (Keeling et al. 2014), and Phaeocystis references known not to form colonies ( Phaeocystis rex , Phaeocystis jahnii , Phaeocystis cordata ) ... : This material is based upon work supported by the U.S. Department of Energy, Office of Science, Office of Advanced Scientific Computing Research, Department of Energy Computational Science Graduate Fellowship under Award Number DE-SC0020347 (A.I.K.). The work conducted by the US Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science user facility, is supported by the Office of Science of the US Department of Energy, operated under contract no. DE-AC02-05CH11231 (A.I.K.). M.M.B. is supported by a Simons Foundation Postdoctoral Fellowship in Marine Microbiology (award 874439). H.A. is supported by a Simons Foundation Early Career Investigator in Aquatic Microbial Ecology and Evolution Award (award 931886). ... |
format |
Dataset |
author |
Krinos, Arianna Brisbin, Margaret Mars Hu, Sarah Cohen, Natalie Rynearson, Tatiana Follows, Michael Schulz, Frederik Alexander, Harriet |
author_facet |
Krinos, Arianna Brisbin, Margaret Mars Hu, Sarah Cohen, Natalie Rynearson, Tatiana Follows, Michael Schulz, Frederik Alexander, Harriet |
author_sort |
Krinos, Arianna |
title |
EUKulele databases for Phaeocystis mapping (Krinos et al. 2023) ... |
title_short |
EUKulele databases for Phaeocystis mapping (Krinos et al. 2023) ... |
title_full |
EUKulele databases for Phaeocystis mapping (Krinos et al. 2023) ... |
title_fullStr |
EUKulele databases for Phaeocystis mapping (Krinos et al. 2023) ... |
title_full_unstemmed |
EUKulele databases for Phaeocystis mapping (Krinos et al. 2023) ... |
title_sort |
eukulele databases for phaeocystis mapping (krinos et al. 2023) ... |
publisher |
Zenodo |
publishDate |
2023 |
url |
https://dx.doi.org/10.5281/zenodo.8269166 https://zenodo.org/record/8269166 |
genre |
Antarc* Antarctica |
genre_facet |
Antarc* Antarctica |
op_relation |
https://dx.doi.org/10.5281/zenodo.8269165 |
op_rights |
Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.5281/zenodo.826916610.5281/zenodo.8269165 |
_version_ |
1778535134855692288 |