EUKulele databases for Phaeocystis mapping (Krinos et al. 2023) ...

Supplementary dataset for Krinos et al. 2023, Missing microbial eukaryotes and misleading meta-omic conclusions, bioRxiv . Each zipped folder is a different database containing some subset of the Phaeocystis references used to map against the Tara Oceans metagenomes. These folders contain a combined...

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Bibliographic Details
Main Authors: Krinos, Arianna, Brisbin, Margaret Mars, Hu, Sarah, Cohen, Natalie, Rynearson, Tatiana, Follows, Michael, Schulz, Frederik, Alexander, Harriet
Format: Dataset
Language:unknown
Published: Zenodo 2023
Subjects:
protist
oceanography
Phaeocystis
EUKulele
taxonomy
metaomics
metagenomics
Antarc*
Antarctica
Online Access:https://dx.doi.org/10.5281/zenodo.8269166
https://zenodo.org/record/8269166
Description
Summary:Supplementary dataset for Krinos et al. 2023, Missing microbial eukaryotes and misleading meta-omic conclusions, bioRxiv . Each zipped folder is a different database containing some subset of the Phaeocystis references used to map against the Tara Oceans metagenomes. These folders contain a combined database and taxonomy table derived from other sequencing dataset resources which can be used directly with the EUKulele software. `marmmetsp_all_phaeo.tar.gz` - full database including MarRef, MMETSP (Keeling et al. 2014), and all Phaeocystis references as listed in Krinos et al. (2023) `marmmetsp_all_colonies.tar.gz` - database including MarRef, MMETSP (Keeling et al. 2014), and Phaeocystis references known to form colonies ( Phaeocystis antarctica , Phaeocystis pouchetii , Phaeocystis globosa ) `marmmetsp_all_free.tar.gz` - database including MarRef, MMETSP (Keeling et al. 2014), and Phaeocystis references known not to form colonies ( Phaeocystis rex , Phaeocystis jahnii , Phaeocystis cordata ) ... : This material is based upon work supported by the U.S. Department of Energy, Office of Science, Office of Advanced Scientific Computing Research, Department of Energy Computational Science Graduate Fellowship under Award Number DE-SC0020347 (A.I.K.). The work conducted by the US Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science user facility, is supported by the Office of Science of the US Department of Energy, operated under contract no. DE-AC02-05CH11231 (A.I.K.). M.M.B. is supported by a Simons Foundation Postdoctoral Fellowship in Marine Microbiology (award 874439). H.A. is supported by a Simons Foundation Early Career Investigator in Aquatic Microbial Ecology and Evolution Award (award 931886). ...

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