Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling ...

• Main Authors: Cohen, Natalie, Krinos, Arianna, Alexander, Harriet, Saito, Mak
• Format: Dataset
• Language: English
• Published: Zenodo 2024
• Subjects: metatranscriptome, protists, ocean, microbes; North Atlantic
• Online Access: https://dx.doi.org/10.5281/zenodo.7317271; https://zenodo.org/doi/10.5281/zenodo.7317271

Metatranscriptomic assembly, predicted open reading frames, counts, and annotation files from seawater samples obtained in the western North Atlantic Ocean. GitHub notebooks are located here: https://github.com/cnatalie/BATS. Assembly was created using the eukrhythmic pipeline: https://github.com/AlexanderLabWHOI/eukrhythmic merged_merged.fasta.gz = Final assembly, merged across 44 metatranscriptomes using 4 different assemblers merged.fasta.transdecoder.pep.zip = Open reading frames of final assembly, predicted by Transdecoder merged.fasta.transdecoder-estimated-taxonomy.out.zip = EUKulele-derived taxonomic annotations of ORFs using a combined EukProt, PhyloDB, and RefSeq reference database newtaxa.eukprot.merged.fasta.transdecoder-estimated-taxonomy.out.zip = similar to above, but manually curated mid-level taxonomy for supergroups of interest eggnog.emapper.annotations.zip = eggnog-mapper annotations of ORFs table.tab.zip = counts associated with ORFs (merged.fasta.transdecoder.pep) generated with Salmon ...