Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling ...

Metatranscriptomic assembly, predicted open reading frames, counts, and annotation files from seawater samples obtained in the western North Atlantic Ocean. GitHub notebooks are located here: https://github.com/cnatalie/BATS. Assembly was created using the eukrhythmic pipeline: https://github.com/Al...

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Bibliographic Details
Main Authors: Cohen, Natalie, Krinos, Arianna, Alexander, Harriet, Saito, Mak
Format: Dataset
Language:English
Published: Zenodo 2024
Subjects:
Online Access:https://dx.doi.org/10.5281/zenodo.7317271
https://zenodo.org/doi/10.5281/zenodo.7317271
Description
Summary:Metatranscriptomic assembly, predicted open reading frames, counts, and annotation files from seawater samples obtained in the western North Atlantic Ocean. GitHub notebooks are located here: https://github.com/cnatalie/BATS. Assembly was created using the eukrhythmic pipeline: https://github.com/AlexanderLabWHOI/eukrhythmic merged_merged.fasta.gz = Final assembly, merged across 44 metatranscriptomes using 4 different assemblers merged.fasta.transdecoder.pep.zip = Open reading frames of final assembly, predicted by Transdecoder merged.fasta.transdecoder-estimated-taxonomy.out.zip = EUKulele-derived taxonomic annotations of ORFs using a combined EukProt, PhyloDB, and RefSeq reference database newtaxa.eukprot.merged.fasta.transdecoder-estimated-taxonomy.out.zip = similar to above, but manually curated mid-level taxonomy for supergroups of interest eggnog.emapper.annotations.zip = eggnog-mapper annotations of ORFs table.tab.zip = counts associated with ORFs (merged.fasta.transdecoder.pep) generated with Salmon ...