Environmentontology/Envo: Ecotone

• Main Authors: Buttigieg, Pier Luigi, Mungall, Chris, Blumberg, Kai, , Renzo, Uberon
• Format: Article in Journal/Newspaper
• Language: unknown
• Published: Zenodo 2017
• Subjects: Arctic
• Online Access: https://dx.doi.org/10.5281/zenodo.573849; https://zenodo.org/record/573849

This is a pre-release including a few terms and enhancements that were needed by our users. A full release with more informative notes will be posted soon. Commit log commit 05a3e3a8a4629dd15bc444c5332967e76e97f618 Author: pbuttigieg Date: Wed May 10 17:29:15 2017 +0200 a pre-release for some urgent requests commit 6f82b09d5cd7126cd8207836a1a6ec95a6e94991 Author: pbuttigieg Date: Wed May 10 16:57:55 2017 +0200 refinements on polar classes and some hierarchy organisation commit e96e556682fef54745a8f388080c20ee32400f38 Author: pbuttigieg Date: Wed May 10 16:44:43 2017 +0200 queued PCO:'microbial community' for import commit 79fade1626edeb955d2bcf86a096ad266dfb18d4 Author: pbuttigieg Date: Thu May 4 16:21:53 2017 +0200 added obsolete prefix to deprecated term labels commit ba3c7dcf3538a8ab56a221560763ad79ba035f9b Author: pbuttigieg Date: Thu May 4 15:47:00 2017 +0200 Fixing build: obsolete terms in axioms commit 0e30ce4dcde0468b79c406f38761aa0210263c6d Author: pbuttigieg Date: Thu May 4 15:37:20 2017 +0200 addressing #507 commit 47dfa1ffc99d6c763c6f4aa2c2bc94566efce905 Author: pbuttigieg Date: Thu May 4 14:52:25 2017 +0200 fixed replaced_by reference for aerial habitat commit a22bc5f88abf93aa34893165d40cf5c53529230d Author: pbuttigieg Date: Sat Apr 29 12:43:09 2017 +0200 addressing #504, fixed def for desublimation of vapour to ice commit 876be99e1cd1af594d637c66e7f9f8593dfbf907 Author: pbuttigieg Date: Sat Apr 29 12:13:53 2017 +0200 addressing #504 commit 35b8dd86da5b0acc62072cb1ab014741ce16f218 Author: Kai Date: Thu Apr 27 18:03:21 2017 +0200 minor edits made to envo polar terms, typo corrections, added axiomatizations and added class errosion through nivation commit e17a04a734fd6ce41c440d4b76495a3573014d7b Author: pbuttigieg Date: Wed Apr 26 21:21:06 2017 +0200 addressing #500 commit 91b103a60ff4cda8db33bab0f18521382af7f9c2 Author: pbuttigieg Date: Wed Apr 26 21:04:34 2017 +0200 Addresses #501 commit 00034228a713c11e7358b7c058299b69dcc91954 Author: pbuttigieg Date: Mon Apr 24 16:51:02 2017 +0200 adding new imports to release dirs commit 7afcbbc560e90709772d42515e218f17ca3a4a3b Author: pbuttigieg Date: Mon Apr 24 16:42:36 2017 +0200 adding tsv for #494 commit be8a95dab2515ab5e1f446dd07bc6cbef91002f5 Author: pbuttigieg Date: Mon Apr 24 16:40:35 2017 +0200 adding CSV for classes in subset for issues such as #494 commit a38f57d14301e3c08f71ae198a39895bb89d68ac Author: pbuttigieg Date: Mon Apr 24 15:56:53 2017 +0200 updated all reports commit d438f3f038e62e5238e9667fa44a9dde59e3576c Author: pbuttigieg Date: Sun Apr 23 23:34:39 2017 +0200 Addressing #502 commit d5fdb1d049367c730542cbfb210e53873982d838 Author: pbuttigieg Date: Sun Apr 23 23:15:21 2017 +0200 Addressing #491 commit f1d6c0c4517352be979f151765e8147c08d745d7 Author: pbuttigieg Date: Sat Apr 15 21:16:22 2017 +0200 new release: Polar express commit cb7178e00f41b15b9038b0d8a55ae2118d497426 Author: pbuttigieg Date: Sat Apr 15 11:06:00 2017 +0200 closes #466, added IAO imports commit 886dfbc7e062caafcb4637225752b1992d398b6b Merge: b445dd5 3dbcd1e Author: Pier Luigi Buttigieg Date: Fri Apr 14 11:03:51 2017 +0200 Merge pull request #487 from kaiiam/master This merge adds a healthy dose of classes and relations for project cryophile - covering environments and their processes in polar systems commit 3dbcd1e0e189162f2fe8be62021c8fa147ac6260 Merge: fe2966e b445dd5 Author: Kai Date: Thu Apr 13 11:28:07 2017 +0200 Merge remote-tracking branch 'upstream/master' Merged IAO imports and makefile changes from Pier. commit b445dd57954a1d55741ee813181ff25bb12a146d Author: pbuttigieg Date: Wed Apr 12 18:55:24 2017 +0200 added IAO import and edited Makefile accordingly commit fe2966e834151540bf9270a023b6047baf616ccb Author: Kai Date: Tue Apr 11 17:23:52 2017 +0200 Added in_subset envoPolar for polar related classes, removed cirque basin as duplicate concept predating it cirque existed, and move the valley hierarchy under geographic depression. #487 commit 3e8f57bb30d6db8c4de4e7d4a468099096b33624 Author: Kai Date: Tue Apr 11 11:58:40 2017 +0200 Fixed bug in cryoconite hole axiomatization, changed causally downstream of some aeolian transport process to formed as result of some aeolian transport process. commit dc8b426a52546b4fc9be70381be87d4733516880 Merge: 1d9e254 bbba184 Author: Kai Date: Tue Apr 11 11:32:47 2017 +0200 Merge remote-tracking branch 'upstream/master' Imported causal relations from RO. commit 1d9e25490eb8aa7eb91f17154389001b9bcdd2e0 Author: Kai Date: Tue Apr 11 11:31:35 2017 +0200 Began adding Pier's orcid to the project cryophile classes created. Addressed the melt pond #489, and thaw hole hierarchies, creating the upper level class channel and moving tunnel under it. Also made issue requesting for a class such as PATO:microbial community #499. commit bbba1845e1fdde1486b03bc11f29def6c2ca3a87 Merge: 5359e45 73dccf6 Author: pbuttigieg Date: Mon Apr 10 20:58:20 2017 +0200 Merge branch 'master' of https://github.com/EnvironmentOntology/envo syncing web-edited files with local push on imports commit 5359e45770941b41d65fc6e1e1d4e97ba856b7c5 Author: pbuttigieg Date: Mon Apr 10 20:57:59 2017 +0200 added causal relations to RO import commit 1cdcf0fa99aaed10dfb9bca034cd913843966a7b Author: Kai Date: Mon Apr 10 12:28:11 2017 +0200 Added final classes for project cryophile pull request 3 snowpack, perennial snow patch, move the precipitation process hierarchy to be subclass of material transport process, see https://github.com/EnvironmentOntology/envo/pull/487#issuecomment-292571243 commit d81e45445e12742d6e245c75bfa86ef792013e9b Author: Kai Date: Sun Apr 9 01:21:30 2017 +0200 Added and modified more polar related terms, season generating process associated terms as well as snow melt and snow drift associated terms see latter half of https://github.com/EnvironmentOntology/envo/pull/487#issuecomment-292571243 starting with season generating process and ending with snow patch. commit c85ef18e5a2160d4748cd1d7eb7a4abb7d5b03a7 Author: Kai Date: Fri Apr 7 19:20:53 2017 +0200 Modified and added classes polar and gas emission processes see https://github.com/EnvironmentOntology/envo/pull/487#issuecomment-292526931 commit fcbd366cd52e212a3fe95739e3769da585bb1f75 Merge: cf41b5a 73dccf6 Author: Kai Date: Fri Apr 7 10:42:17 2017 +0200 Merge remote-tracking branch 'upstream/master' commit cf41b5a0d1c6de78207d3b1721b557cdc975f6fe Author: Kai Date: Fri Apr 7 10:40:41 2017 +0200 Added ice formation process and ice type related classes see https://github.com/EnvironmentOntology/envo/pull/487#discussion_r110089957 commit 73dccf6dba1d8e48291f5e192359dd6e0ac25b58 Author: Pier Luigi Buttigieg Date: Thu Apr 6 18:17:01 2017 +0200 Resort and give ranges to new patterns in #492 commit 31ca0c713ec8f2dc2df70ce563a2141e5c4eb08d Author: pbuttigieg Date: Thu Apr 6 18:01:43 2017 +0200 added oxidant for #487 commit 9cdfcb158d1fb30fd5b22a9e69d365482819404c Merge: 43557c3 9fa5ec8 Author: Kai Date: Thu Apr 6 14:48:40 2017 +0200 Merge remote-tracking branch 'upstream/master' importing pato terms from upstream commit 9fa5ec862da9bc672ba62faa418a060d8357fa50 Author: pbuttigieg Date: Thu Apr 6 14:45:24 2017 +0200 imported PATO classes for #486 #487 #488 commit 43557c3a736eda95f7d8481e4689adb39bbfc091 Author: Kai Date: Thu Apr 6 10:43:37 2017 +0200 Added ice formation and ice flow related classes see https://github.com/EnvironmentOntology/envo/pull/487#discussion_r110089957 commit 47b20923876a11779c42d32f64f8f74135f5a379 Author: Kai Date: Thu Apr 6 08:45:18 2017 +0200 Added and updated meltpond related classes see https://github.com/EnvironmentOntology/envo/pull/487#discussion_r109682927 discussion which was somehow clipped of from #487 commit e3e88c1d9c8b3833f697fa28882fcfcd91bb0429 Author: Kai Date: Thu Apr 6 08:13:04 2017 +0200 minor edits for #487 commit b0c253e40b37a5c203a8505b7663b01ab638ddc1 Author: Kai Date: Wed Apr 5 13:28:47 2017 +0200 modified sediment and arctic related classes as doccumented in #483 and #487 commit f144d1c1393ae3c8cdb2983a0a994bd02371ed06 Author: Kai Date: Fri Mar 31 19:29:51 2017 +0200 added more arctic classes see discussion in #483 commit b94e86b413f6e11d662356102d433aa8f15fb8a5 Merge: b280935 43150a7 Author: Pier Luigi Buttigieg Date: Thu Mar 30 18:33:42 2017 +0200 Merge pull request #481 from kaiiam/master This PR has been reviewed and is ready for merging. There will still be edits that will follow, but in a new PR from @kaiiam. commit 43150a7cd193fabc464e3ec86b5053946acf5c73 Author: Kai Date: Thu Mar 30 18:14:08 2017 +0200 final edits for #481 commit 17f65c62aad086330feeb5305a1802f1bdf5e78e Author: Kai Date: Thu Mar 30 18:01:54 2017 +0200 added additional axioms to #481 commit 8374d49ac47d3910e193b7be75fb3dc45f255516 Author: Kai Date: Thu Mar 30 17:09:22 2017 +0200 fixed axioms breaking build in #481 commit 855136b02cbb21c8f61a7a7233d7433ac6e47109 Author: Kai Date: Thu Mar 30 16:36:05 2017 +0200 added axioms for classes added in #481 and added powdery snow commit cf835a3d6ed1444a8e9e55132bbfd83f986ac28e Author: Kai Date: Thu Mar 30 13:07:36 2017 +0200 fixed issues related to build failure for #481 commit 749ce2a4db8314f1af87dcf553fd89825148d5a5 Author: Kai Date: Wed Mar 29 18:22:55 2017 +0200 fixed issues for project cryophile 2nd pull request #481 commit b280935eab396e12a795c1c0b6072625080787e5 Author: Pier Luigi Buttigieg Date: Wed Mar 29 17:54:13 2017 +0200 Fixed subset wiki link commit 55c5fff62194f303c5d923f09019d1ce98dcc56e Author: Kai Date: Tue Mar 28 20:15:19 2017 +0200 addressing #475 added: aeolian transport process, & soot commit 14099a98718f847517065635df84affdbb94baf1 Author: Kai Date: Tue Mar 28 19:07:06 2017 +0200 addressing #474 & #475 added: blue ice, compaction process, material accumulation process, material transport process, ice gain, glacial transport process, updated alpine glacier, added: cirque glaciers, cirque basin, glacial erosion process, geographic basin, glacial ice loss, material decumulation process, glacial ice loss, and englacial stream. commit 299650d5ff6521a67d4a646548997ebe5d5fea0e Author: Kai Date: Tue Mar 28 15:26:41 2017 +0200 revamped definition for glacier, added glacial ice as subclass of ice mass, erosionally enriched glacial ice, & glacial erosion process. commit 135a712c1c793c860507e06c36aab52624645169 Author: Kai Date: Tue Mar 28 12:46:25 2017 +0200 added niviation commit b8b6c594bcc96f01361c63191ae83c7f97b51d79 Author: Kai Date: Tue Mar 28 11:45:42 2017 +0200 updated definitions for neve and firn