LOFAR SKSP Software Image
This Singularity image contains an install of LOFAR ${LOFAR_VERSION}. In order to run your pipelines, you may need to know where the software is installed. The root directory is /opt/lofar, with all software installed as follows: * AOFlagger: $INSTALLDIR/aoflagger * Casacore: $INSTALLDIR/casacore *...
| Main Authors: | , |
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| Format: | Article in Journal/Newspaper |
| Language: | English |
| Published: |
Zenodo
2019
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| Subjects: | |
| Online Access: | https://dx.doi.org/10.5281/zenodo.3465282 https://zenodo.org/record/3465282 |
| Summary: | This Singularity image contains an install of LOFAR ${LOFAR_VERSION}. In order to run your pipelines, you may need to know where the software is installed. The root directory is /opt/lofar, with all software installed as follows: * AOFlagger: $INSTALLDIR/aoflagger * Casacore: $INSTALLDIR/casacore * Dysco: $INSTALLDIR/dysco * LOFAR: $INSTALLDIR/lofar * LoSoTo: $INSTALLDIR/losoto * PyBDSF: $INSTALLDIR/pybdsf * RMextract: $INSTALLDIR/RMextract To execute a command, use singularity exec -B <paths,that,need,to,be,accessible> <path to image> <command> <arguments> for example: #singularity exec lofar.simg genericpipeline.py -d -c pipeline.cfg pipeline.parset All packages located in /opt/lofar: Available packages: DPPP 4.1 LOFARBeam 2.8.12.2 RMextract 0.4 aoflagger 2.14.1 (2019-05-21) armadillo 8.600.0 boost 1_6_30 casacore 2.2.1 cfitsio 3.41 cmake 2.8.12.2 ds9 8.0.1 dysco fftw 3.3.8 hdf5 1.8.21 idg lofar losoto 2.0 lsmtool 1.4.1 make 3.82 openblas pybdsf 1.8.15 python-casacore superlu wcslib wsclean 2.7.2 Python Packages: APLpy==1.1.1 astropy==2.0.14 atomicwrites==1.3.0 attrs==19.1.0 backports.functools-lru-cache==1.5 backports.ssl-match-hostname==3.5.0.1 boost==0.1 certifi==2019.6.16 chardet==3.0.4 cycler==0.10.0 decorator==4.4.0 funcsigs==1.0.2 h5py==2.9.0 idna==2.8 iniparse==0.4 ipaddress==1.0.16 IPy==0.75 kitchen==1.1.1 kiwisolver==1.1.0 linecache2==1.0.0 Mastodon.py==1.4.6 matplotlib==2.2.4 mimeparse==0.1.3 mock==3.0.5 more-itertools==5.0.0 nose==1.3.7 numexpr==2.7.0 numpy==1.16.4 pluggy==0.7.1 policycoreutils-default-encoding==0.1 pp==1.6.5 progressbar==2.5 py==1.8.0 pycurl==7.19.0 pygobject==3.22.0 pygpgme==0.3 pyliblzma==0.5.3 pyparsing==2.4.2 pytest==3.6.4 python-dateutil==2.8.0 python-magic==0.4.15 python-monetdb==11.19.3.2 pytz==2019.2 pyvo==0.9.3 pyxattr==0.5.1 requests==2.22.0 scipy==1.2.2 seobject==0.1 sepolicy==1.1 six==1.12.0 SQLAlchemy==1.3.7 subprocess32==3.5.4 tables==3.5.2 traceback2==1.4.0 unittest2==1.1.0 urlgrabber==3.10 urllib3==1.25.3 xmlrunner==1.7.7 yum-metadata-parser==1.1.4 |
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