Phylogeny and systematics of Diptera: Two decades of progress and prospects *

Yeates, David K., Wiegmann, Brian M., Courtney, Greg W., Meier, Rudolf, Lambkin, Christine, Pape, Thomas (2007): Phylogeny and systematics of Diptera: Two decades of progress and prospects *. Zootaxa 1668: 565-590, DOI: 10.5281/zenodo.180150 : {"references": ["Aluja, M. & Norrbom,...

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Main Authors: Yeates, David K., Wiegmann, Brian M., Courtney, Greg W., Meier, Rudolf, Lambkin, Christine, Pape, Thomas
Format: Article in Journal/Newspaper
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Published: Zenodo 2007
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Online Access:https://dx.doi.org/10.5281/zenodo.180150
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Summary:Yeates, David K., Wiegmann, Brian M., Courtney, Greg W., Meier, Rudolf, Lambkin, Christine, Pape, Thomas (2007): Phylogeny and systematics of Diptera: Two decades of progress and prospects *. Zootaxa 1668: 565-590, DOI: 10.5281/zenodo.180150 : {"references": ["Aluja, M. & Norrbom, A.L., eds. (2000) Fruit Flies (Tephritidae): Phylogeny and Evolution of Behavior. Boca Raton, FL, CRC Press.", "Amorim, D.S. (2000) A new phylogeny and phylogenetic classification for the Canthyloscelidae (Diptera , Psychodomorpha). Canandian Journal of Zoology, 78, 1067-1077.", "Amorim, D.S. & Grimaldi, D.A. (2006) Valeseguyidae, a new family of Diptera in the Scatopsoidea, with a new genus in Cretaceous amber from Myanmar. Systematic Entomology, 31, 508-516.", "Amorim, D.S. & Yeates, D.K. (2006) Pesky gnats, ridding dipteran classification of the \"Nematocera\". Studia Dipterologica, 13, 3-9.", "Amorim, D.S. & Rindal, E. (2007) Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera: Bibionomorpha). Zootaxa, 1535, 1-92.", "Anthony, T.G., Harbach, R.E. & Kitching I.J. (1999) Phylogeny of the Pyretophorus Series of Anopheles Subgenus Cellia (Diptera , Culicidae). Systematic Entomology, 24, 193-205.", "Arens, W. (1995) Structure and evolution of spiracular gills in pupae of net-winged midges (Nematocera, Blephariceridae), Part I. Paulianina and Edwardsina (subfamily Edwardsininae). Canadian Journal of Zoology, 73, 2318- 2342.", "Baker, R., Wilkinson, G.S. & DeSalle, R. (2001) Phylogenetic utility of different types of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae). Systematic Biology, 50, 87-105.", "Baum, B.R. (1992) Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees. Taxon, 41, 3-10.", "Beckenbach, A.T. & Borkent, A. (2003) Molecular analysis of the biting midges (Diptera: Ceratopogonidae), based on mitochondrial cytochrome oxidase subunit 2. Molecular Phylogenetics and Evolution, 27, 21-35.", "Beebe, N., Cooper, R., Morrison, D. & Ellis J. (2000) A phylogenetic study of the Anopheles punctulatus group of malaria vectors comparing rDNA sequence alignments derived from the mitochondrial and nuclear small ribosomal subunits. Molecular Phylogenetics and Evolution, 17, 430-436.", "Bernasconi, M.V., Pawlowski, J., Valsangiacomo, C., Piffaretti, J. & Ward, P. (2000) Phylogeny of the Scathophagidae (Diptera: Calyptrata) based on mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 16, 308- 315.", "Besansky, N.J. & Fahey, G.T. (1997) Utility of the white gene in estimating phylogenetic relationships among mosquitoes (Diptera: Culicidae). Molecular Biology and Evolution, 14, 442-454.", "Beverly, S.M. & Wilson A.C. (1984) Molecular evolution in Drosophila and the higher Diptera II. A time scale for fly evolution. Journal of Molecular Evolution, 21, 1-13.", "Bininda-Edmonds, O.R.P., Gittleman J.L. & Steel M.A. (2002) The (Super) Tree of Life, Procedures, problems, and prospects. Annual Review of Ecology and Systematics, 33, 265-289.", "Blagoderov, V., Grimaldi, D.A. & Fraser, N.C. (2007) How time flies for flies, Diverse Diptera from the triassic of Virginia and Early Radiation of the Order. American Museum Novitates 3572, 39 pp.", "Blaschke-Berthold, U. (1994) Anatomie und Phylogenie der Bibionomorpha (Insecta: Diptera). Bonner Zoologische Monographien, 34, 1-206.", "Bolshakov, V.N., Topalis, P., Blass, C., Kokoza, E., della Torre, A., Kafatos, F.C. & Louis, C. (2002) A comparative genomic analysis of two distant diptera, the fruit fly, Drosophila melanogaster, and the malaria mosquito, Anopheles gambiae Genome Research 12, 57-66.", "Brake, I. (2000) Phylogenetic systematics of the Milichiidae (Diptera: Schizophora). Entomologica Scandinavica Supplement, 57, 1-120.", "Brammer, C.A. & von Dohlen, C.D. (2007) Evolutionary history of Stratiomyiidae (Insecta: Diptera), The molecular phylogeny of a diverse family of flies. Molecular Phylogeny and Evolution, 43, 660-673.", "Buck, M. (2006) A new family and genus of acalypterate flies from the Neotropical Region, with a phylogenetic analysis of Carnoidea family relationships (Diptera: Schizophora). Systematic Entomology, 31, 377-404.", "Buschbeck, E. (2000) Neurobiological constraints and fly systematics, how different types of neural characters can contribute to a higher level dipteran phylogeny. Evolution, 54, 888-898.", "Bybee, S.M., Taylor, S.D., Nelson, C.R. & Whiting, M.F. (2004) A phylogeny of robber flies (Diptera: Asilidae) at the subfamilial level, molecular evidence. Molecular Phylogeny and Evolution, 30, 789-797.", "Carvalho, C.J.B. (1989) Classificacao de Muscidae (Diptera), uma proposta atraves da analise cladistica. Revista Brasiliera de Zoologica, 6, 627-648.", "Cameron, S.L., Lambkin, C.L. Barker, S.C. & Whiting, M.F. (2007) A mitochondrial genome phylogeny of Diptera: whole genome sequence data accurately resolve relationships over broad timescales with high precision. Systematic Entomology, 32, 40-59.", "Chandler, P. (1981) Nemedina alamirabilis sp. n., a new genus and species of Diptera Eremoneura, of uncertain affinities, from Hungary. Acta Zoologica Academiae Scientiarum Hungariae, 27,103-113.", "Chandler, P. (2002) Heterotricha Loew and allied genera (Diptera: Sciaroidea), offshoots of the stem group of Mycetophilidae and/or Sciaridae. Annales de la Societe Entomologique de France (n.s.), 38, 101-144.", "Chvala, M. (1983) The Empidoidea (Diptera) of Fennoscandia and Denmark. II. General part. The families Hybotidae, Atelestidae and Microphoridae. Fauna Entomologica Scandinavica, 12, 1-297.", "Colless, D.H. & McAlpine, D.K. (1991) Diptera (Flies). In The Insects of Australia, Melbourne, Melbourne University Press, pp. 717-786.", "Colless, D.H. (1994) A new family of muscoid Diptera from Australasia, with sixteen new species in four new genera (Diptera: Axiniidae). Invertebrate Taxonomy, 8, 471-534.", "Collins, K.P. & Wiegmann, B.M. (2002a) Phylogenetic relationships and placement of the Empidoidea (Diptera: Brachycera) based on 28s rDNA and EF-1\u03b1 sequences. Insect Systematics and Evolution, 33, 421-444.", "Collins, K.P. & Wiegmann, B.M. (2002b) Phylogenetic relationships of the lower Cyclorrhapha (Diptera: Brachycera) based on 28S rDNA sequences. Insect Systematics and Evolution, 33, 445-456.", "Couri, M.S., & Carvalho, C.J.B. (2003) Systematic relations among Philornis Meinert, Passeromyia Rodhain & Villeneuve and allied genera (Diptera, Muscidae). Brazilian Journal of Biology, 63, 223-232.", "Courtney, G.W. (1990a) Cuticular morphology of larval mountain midges (Diptera: Deuterophlebiidae), implications for the phylogenetic relationships of Nematocera. Canadian Journal of Zoology, 68, 556-578.", "Courtney, G.W. (1990b) Revision of Nearctic mountain midges (Diptera: Deuterophlebiidae). Journal of Natural History, 24, 81-118.", "Courtney, G.W. (1991) Phylogenetic analysis of the Blephariceromorpha, with special reference to mountain midges (Diptera: Deuterophlebiidae). Systematic Entomology, 16, 137-172.", "Cumming, J.M., Sinclair, B.J. & Wood, D.M. (1995) Homology and phylogenetic implications of male genitalia in Diptera-Eremoneura. Entomologica Scandinavica, 26, 120-151.", "Dahl, C. (1980) Comparison of postembryonic organization of the genital segments in Trichoceridae, Tipulidae, and Anisopodidae (Diptera: Nematocera). Zoologica Scripta, 9, 165-185.", "Daugeron, C. (1997) Evolution of feeding and mating behaviors in the Empidoidea (Diptera: Eremoneura). Memoires du Museum National Histoire Naturelle, 173, 163-182.", "Dittmar, K., Porter, M.L., Murray, S. & Whiting, M.F. (2006) Molecular phylogenetic analysis of nycteribiid and streblid bat flies (Diptera: Brachycera, Calyptratae): Implications for host associations and phylogeographic origins. Molecular Phylogenetics and Evolution, 38, 155-170.", "Downes, W.L., Jr. & Dahlem, G.A. (1987) Keys to the evolution of Diptera: role of Homoptera. Environmental Entomology, 16, 847-854.", "Evenhuis, N.L. (1994) Catalogue Of The Fossil Flies Of The World (Insecta: Diptera). Leiden, Backhuys, and updates at hbs.bishopmuseum.org/fossilcat/.", "Foley, D.H., Wilkerson, R.C., Cooper, R.D., Volovsek, M.E. & Bryan, J.H. (2007) A molecular phylogeny of Anopheles annulipes (Diptera: Culicidae) sensu lato, the most species-rich anopheline complex. Molecular Phylogenetics and Evolution, 43, 283-297.", "Fraser, N.C., Grimaldi, D.A., Olsen, P.E. & Axsmith, B. (1996) A Triassic lagerstatte from eastern North America. Nature, 380, 615-619.", "Friedrich, M. & Tautz, D. (1997a) An episodic change of rDNA nucleotide substitution rate has occurred during the emergence of the insect order Diptera. Molecular Biology and Evolution, 14, 644-653.", "Friedrich, M. & Tautz, D. (1997b) Evolution and phylogeny of the Diptera: A molecular phylogenetic analysis using 28S rDNA. Systematic Biology, 46, 674-698.", "Gaimari, S.D. & Irwin, M.E. (2000) Phylogeny, classification and biogeography of the Cycloteline Therevinae (Insecta: Diptera: Therevidae). Zoological Journal of the Linnean Society, 129, 129-240.", "Gatesy, J., Matthee, C., DeSalle, R., & Hayashi, C. (2002) Resolution of a supertree/supermatrix paradox. Systematic Biology 51, 652-664.", "Gaunt, M.W. & Miles, M.A. (2002) An insect molecular clock dates the origin of insects and accords with Paleontological and biogeographic landmarks. Molecular Biology and Evolution, 19, 748-761.", "Gleeson, D.M., Howitt, R.L.J. & Newcomb, R.D. (2000) The phylogenetic position of the New Zealand batfly, Mystacinobia zelandica (Mystacinobiidae; Oestroidea) inferred from mitochondrial 16S ribosomal DNA sequence data, Journal of the Royal Society of New Zealand, 30, 155-168.", "Griffiths, G.C.D. (1972) The phylogenetic classification of Diptera Cyclorrhapha, with special reference to the structure of the male postabdomen. The Hague: Junk.", "Griffiths, G.C.D. (1982) On the systematic position of Mystacinobia (Diptera: Calliphoridae). Memoirs of the Entomological Society of Washington 10, 70-77.", "Griffiths, G.C.D. (1984) For discussion on \"Male genitalia in the classification of Chloropidae\", XVII International Congress of Entomology: Hamburg.", "Griffiths, G.C.D. (1990) Book review: Manual of Nearctic Diptera Volume 3. Quaestiones Entomologicae, 26, 117-130.", "Griffiths, G.C.D. (1994) Relationships among the major subgroups of Brachycera (Diptera): a critical review. Canadian Entomologist, 126, 861-880.", "Griffiths, G.C.D. (1996) Review of papers on the male genitalia of Diptera by D.M. Wood and associates. Studia Dipterologica, 3, 107-123.", "Grimaldi, D.A. (1990) A phylogenetic, revised classification of genera in the Drosophilidae (Diptera). Bulletin of the American Museum of Natural History, 197, 1-139.", "Grimaldi, D.A. (1999) The co-radiations of pollinating insects and angiosperms in the Cretaceous. Annals of the Missouri Botanical Garden, 86, 373-406.", "Grimaldi, D.A. & Cumming, J.M. (1999) Brachyceran Diptera in Cretaceous Ambers and Mesozoic Diversification of the Eremoneura. Bulletin of the American Museum of Natural History, 239, 1-121.", "Groombridge, B. ed. (1992) Global biodiversity: Status of the Earth's living resources. London: Chapman and Hall.", "Hackman, W. & Vaisanen, R. (1985) The evolution and phylogenetic significance of the costal chaetotaxy in the Diptera. Annales Zoologici Fennici, 22, 169-203.", "Han H-Y & McPheron, B. (1997) Molecular phylogenetic study of Tephritidae (Insecta: Diptera) using partial sequences of the mitochondrial 16S ribosomal DNA. Molecular Phylogenetics and Evolution, 7, 17-32.", "Han, H.-Y., Ro, K.-E. & McPheron, B.A. (2006) Molecular phylogeny of the subfamily Tephritinae (Diptera: Tephritidae) based on mitochondrial 16S rDNA sequences. Molecules and Cells, 22, 78-88.", "Harbach, R.E. & Kitching, I.J. (1998) Phylogeny and Classification of the Culicidae (Diptera). Systematic Entomology, 23, 327-370.", "Harbach, R.E. & Kitching, I.J. (2005) Reconsideration of anopheline phylogeny (Diptera: Culicidae:", "Hennig, W. (1948-1952) Die Larvenformen der Dipteren: eine Ubersicht uber die bisher bekannten Jungendstadien der zweiflugeligen Insekten. Berlin: Akademie-Verlag.", "Hennig, W. (1950) Grundzuge einer theorie der phylogenetischen systematik. Berlin: Deutscher Zentralverlag.", "Hennig, W. (1954) Flugelgeader und System der Dipteren. Beitrage zur Entomologie, 4, 245-388.", "Hennig, W. (1958) Die Familien der Diptera Schizophora und ihre phylogenetischen Verwandtschaftsbeziehungen. Entomologische Beitrage, 8, 505-688.", "Hennig, W. (1966) Phylogenetic systematics. Urbana: University of Illinois Press. [Translation from German]", "Hennig, W. (1968) Kritische Bemerkungen uber den Bau der Flugelwurzel bei den Dipteren und die Frage nach der Monophylie der Nematocera. Stuttgarter Beitrage zur Naturkunde, 195, 1-23.", "Hennig, W. (1971) Insektfossilien aus der unteren Kreide. III. Empidiformia (\"Microphorinae\") aus der unteren Kreide und aus dem Baltischen Bernstein; ein Vertreter der Cyclorrapha aus der unteren Kreide. Stuttgarter Beitrage zur Naturkunde, 232, 1-28.", "Hennig, W. (1973) Diptera (Zweiflugler). Handbuch der Zoologie (Berlin), 4, 1-200.", "Hennig, W. (1976) Das Hypopygium von Lonchoptera lutea Panzer und die phylogenetischen Verwandtschaftsbeziehungen der Cyclorrhapha (Diptera). Stuttgarter Beitrage zur Naturkunde. Series A, 283, 1-63.", "Hennig, W. (1981) Insect phylogeny. New York: J. Wiley & Sons.", "Hippa, H. & Vilkamaa, P. (2006) Phylogeny of the Sciaroidea (Diptera): the implication of additional taxa and character data. Zootaxa, 1132, 63-68.", "Holloway, B.A. (1976) A new bat-fly family from New Zealand (Diptera Mystacinobndae). New Zealand Journal of Zoology, 3, 279-301,", "Holston, K.C., Irwin, M.E. & Wiegmann, B.M. (2007) Monophyly and phylogenetic relationships of Thereva and therevine genus-groups (Insecta: Diptera: Therevidae) based on EF-1\u03b1, 28S Rdna and mitochondrial 16S Rdna sequences. Invertebrate Systematics, 21, 279-296.", "Hutson, A.M. (1977) A revision of the families Synneuridae and Canthyloscelidae. Bulletin of the British Museum (Natural History) Entomology, 35, 67-100.", "Irwin, M.E. & Lyneborg, L. (1981) The genera of Nearctic Therevidae. Bulletin of the Illinois Natural History Survey, 32, 193-277.", "Irwin, M.E. & Wiegmann, B.M. (2001) A review of the southern African genus Tongamya (Diptera: Asiloidea, Mydidae, Megascelinae), with a molecular assessment of the phylogenetic placement of Tongamya and the Megascelinae. African Invertebrates, 42, 225-253.", "Jaschhof, M. & Didham, R.K. (2002) Rangomaramidae fam. nov. from New Zealand and implications for the phylogeny of the Sciaroidea (Diptera: Bibionomorpha). Studia Dipterologica Supplement, 11, 1-60.", "Joy, J.B. & Crespi, B.J. (2007) Adaptive radiation of gall inducing insects within a single host-plant species. Evolution, 61, 784-795.", "Katzourakis, A., Purvis, A., Azmeh, S., Rotheray, G. & Gilbert, F. 2001. Macroevolution of hoverflies (Diptera: Syrphidae): the effect of using higher-level taxa in studies of biodiversity, and correlates of species richness. Journal of Evolutionary Biology, 14, 219-227.", "King, D. (1989) Phylogenetic diversity of cellular organization in the cardia of muscoid flies (Diptera: Schizophora). Journal of Morphology, 202, 435-455.", "King, D. (1991) The origin of an organ: phylogenetic analysis of evolutionary innovation in the digestive tract of flies (Insecta: Diptera). Evolution, 45, 568-588.", "Kitching, R.L., Bickel, D.J. & Boulter, S. (2005) Guild analyses of dipteran assemblages, a rationale and investigation of seasonality and stratification in selected rainforest faunas. In D.K. Yeates and B.M. Wiegmann, eds, The Evolutionary Biology of Flies. New York: Columbia University Press, pp. 388-415.", "Knutson, L. & Vala, J.-C. (2002) An evolutionary scenario of Sciomyzidae and Phaeomyiidae (Diptera). Annales de la Societe Entomologique de France, 38, 145-162.", "Korneyev, V.A. (2000) Phylogenetic relationships among higher groups of Tephritidae. In M. Aluja and A. Norrbom eds., Fruit Fies (Tephritidae): Phylogeny and Evolution of Behaviour. Boca Raton, CRC Press, pp. 73-112.", "Kotrba, M. 1995. The internal female genital organs of Chaetodiopsis and Diasemopsis (Diptera: Diposidae) and their systematic relevance. Annals of the Natal Museum 36, 147-159.", "Kovalev, V. (1979) The main aspects in the evolution of Diptera Brachycera in the Mesozoic Era. In O.A. Skarlato, K.V. Skufjin, E. P. Narchuk, O. P. Negrobov and M.N. Kandybina, eds., Ecological and Morphological Principles of Dipteran Systematics. Leningrad: Akad. Nauk SSSR, Zool. Inst., pp. 35-37.", "Kristensen, N.P. (1991) Phylogeny of extant hexapods. In The insects of Australia. Melbourne: Melbourne University Press, CSIRO, pp. 125-140.", "Krivosheina, N. (1988) Approaches to solutions of questions of classification of the Diptera. Entomologicheskoe Obozrenie, 67, 378-390.", "Krzeminski, W. (1992a) Triassic and Lower Jurassic stage of Diptera evolution. Mitteilungen der schweizerischen entomologischen Gesellschaft, 65, 39-59.", "Krzeminski W. (1992b) The oldest Polyneura (Diptera) and their importance to the phylogeny of the group. Acta Zoologica Cracoviensia, 35, 45-52.", "Krzeminski, W. & Krzeminska, E. (1996) The origin of flies. Kosmos (Warsaw), 45, 701-714.", "Krzeminski, W. & Krzeminska, E. (2003) Triassic Diptera: descriptions, revisions and phylogenetic relations. Acta Zoologica Cracoviensia (suppl.), 46, 153-184.", "Krzywinski, J., Wilkerson, R. & Besansky, N.J. (2001a) Evolution of mitochondrial and ribosomal gene sequences in Anophelinae (Diptera: Culicidae): Implications for a phylogeny reconstruction. Molecular Phylogenetics and Evolution, 18, 479-487.", "Krzywinski, J., Wilkerson, R. & Besansky, N.J. (2001b) Towards understanding Anophelinae (Diptera: Culicidae) phylogeny: Insights from nuclear single-copy genes and the weight of evidence. Systematic Biology, 50, 540-556.", "Kukalova-Peck, J. (1991) Fossil history and the evolution of hexapod structures. In The Insects of Australia, Melbourne: Melbourne University Press, CSIRO, pp. 141-79.", "Kutty, S.N., M.V. Bernasconi, F. ifner, F. & Meier, R. (2007) Sensitivity analysis, molecular systematics, and natural history evolution of Scathophagidae (Diptera: Cyclorrhapha: Calyptratae). Cladistics, 23, 64-83.", "Laamanen, T. R., Meier, R., Miller, M.A., Hille, A. & Wiegmann, B.M. (2005) Phylogenetic analysis of Themira (Sepsidae, Diptera), sensitivity analysis, alignment, and indel treatment in a multigene study. Cladistics, 21, 258- 271.", "Labandeira, C. (1994) A compendium of fossil insect families. Milwauke Public Museum Contributions to Biology and Geology, 88, 1-71.", "Labandeira, C. (1997) Insect mouthparts: ascertaining the paleobiology of insect feeding strategies. Annual Review of Ecology and Systematics, 28, 153-193.", "Labandeira, C. (1998) How old is the fly and the flower? Science, 280, 57-59.", "Labandeira, C. (2005) Fossil history and evolutionary ecology of Diptera and their associations with plants. In D.K. Yeates and B.M. Wiegmann, eds., The Evolutionary Biology of Flies. New York: Columbia University Press, pp. 217-273.", "Lambkin, C.L. & Yeates, D.K. (2003) Combined morphological and molecular analysis of the Australian Anthracinae (Diptera: Bombyliidae). Invertebrate Systematics, 17, 735-891.", "Marinoni, L. & Mathis, W.N. (2000) A Cladistic Analysis of Sciomyzidae Fallen (Diptera). Proceedings of the Biological Society of Washington, 113, 162-209.", "Marois, R. & Meinertzhagen, I. (1990) The visual system of flies: analysis of the number, specificity, plasticity, and phylogeny of identified synapses. NATO Advanced Scientific Institute Service, Series A, Life Sciences, 192, 127-39.", "McAlpine, D.K. (1985) The Australian genera of Heleomyzidae (Diptera: Schizophora) and a reclassification of the family into tribes. Records of the Australian Museum, 36, 203-251.", "McAlpine, D.K. (1996) Relationships and classification of the P