kangluyao/Microbes_in_Tibetan_permafrost: Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau ...

• Main Author: Luyao Kang
• Format: Article in Journal/Newspaper
• Language: unknown
• Published: Zenodo 2024
• Subjects: permafrost
• Online Access: https://dx.doi.org/10.5281/zenodo.11544354; https://zenodo.org/doi/10.5281/zenodo.11544354

Microbes in Tibetan permafrost This project repository associated with the following manuscript: Luyao Kang, Yutong Song, Rachel Mackelprang, Dianye Zhang, Shuqi Qin, Leiyi Chen, Linwei Wu, Yunfeng Peng and Yuanhe Yang*. Metagenomic insights into microbial structure and metabolism in alpine permafrost on the Tibetan Plateau. ... : Structure . ├── data1 ├── 16S ├── metadata.txt <--metadata including the climatic, vegetable for samples ├── otus.nwk <--phylogenetic tree for ASVs ├── otutab.txt <--ASV table ├── otutab_rare.txt <--Rarefy ASV table └── taxonomy.txt <--Taxonomic table ├── Functional genes ├── eggnog.KEGG_ko.raw.counts.txt <-- KEGG KO table with row counts └── eggnog.KEGG_ko.raw.tpm.txt <-- KEGG KO table with TPM tansformation ├── Metabolic ├── bin_abundance_table.tab <-- Abundance table for each bin ├── METABOLIC_result.xlsx <-- Summary of the presence/absence of functional genes on each genome ├── MW_score_result.csv <-- Resuts of metabolic weighted scores for the metagenomic assembly genomes └── tax.txt <-- Taxnomic identificcation for each bin └── Supplementary Data ├── Supplementary Data 1.xlsx <-- Characteristics of recovered metagenomic assembly genomes (MAGs) ├── Supplementary Data 2.xlsx <-- Custom selected KEGG genes used to define metabolic pathways └── Supplementary Data ...