Drennan 2024 Doctoral Thesis Chapter 5 dataset - SNP catalogs ...
This dataset supports the thesis entitled “Patterns of Diversity, Connectivity, and Evolution in Southern Ocean and Deep-Sea Annelids” by Regan Drennan AWARDED BY: University of Southampton DATE OF AWARD: 2024 DESCRIPTION OF THE DATA: Genomic data generated in thesis Chapter 5: Population genomics,...
| Main Authors: | , , , , , , |
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| Format: | Dataset |
| Language: | unknown |
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Zenodo
2024
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| Online Access: | https://dx.doi.org/10.5281/zenodo.10606640 https://zenodo.org/doi/10.5281/zenodo.10606640 |
| Summary: | This dataset supports the thesis entitled “Patterns of Diversity, Connectivity, and Evolution in Southern Ocean and Deep-Sea Annelids” by Regan Drennan AWARDED BY: University of Southampton DATE OF AWARD: 2024 DESCRIPTION OF THE DATA: Genomic data generated in thesis Chapter 5: Population genomics, cryptic diversity and phylogeographic structure in the Southern Ocean circumpolar annelid, Aglaophamus trissophyllus (Annelida: Nephtyidae) Single nucleotide polymorphism (SNP) genomic data was prepared and sequenced using a ddRADseq library preparation protocol (see Chapter 5 Results section 5.2.5 for more details). Following sequencing, filtering and locus assembly was carried out using Stacks v 2.64 https://catchenlab.life.illinois.edu/stacks/ - Stacks generates a catalog to determine which haplotype alleles are present at every locus in each individual. This dataset includes all catalogs analysed in thesis Chapter 5 following initial QC, processing, and quality filtering steps (see Chapter 5 Results section ... |
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