Data for paper: The making of a genetic cline: introgression of oceanic genes into coastal cod populations in the North East Atlantic ...
Files included in this data package includes data, scripts and a simulation program to replicate simulations of genetic divergence patterns and comparision with observations, as described in the paper. Filename: content coastalcoddata.csv: genotypes and metadata, described in detail below IBD.dat: d...
| Main Authors: | , , , , , , , |
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| Format: | Dataset |
| Language: | English |
| Published: |
Dryad
2021
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| Subjects: | |
| Online Access: | https://dx.doi.org/10.5061/dryad.zs7h44j7t https://datadryad.org/stash/dataset/doi:10.5061/dryad.zs7h44j7t |
| Summary: | Files included in this data package includes data, scripts and a simulation program to replicate simulations of genetic divergence patterns and comparision with observations, as described in the paper. Filename: content coastalcoddata.csv: genotypes and metadata, described in detail below IBD.dat: data, pairwise observed Fst among cod samples report_pairwise_Fst_Vikingbank.R: R-script to extract relevant data from IBD.dat connectivity_matrix.txt: output from oceanographic modelling, for simulations popfile.dat: population data, for simulations simmat: compiled simulation program (linux 64 bit, dynamically linked) simmat.c: C source code for simmat simulation program simloop.R: R-script for running simulations (R.scripts uses the R computing environment: https://www.r-project.org/) The coastalcoddata.csv file contains SNP genotypes and metadata for individual cod (one line per individual), coastal cod as well as reference samples: Column name: Explanation RefSamp: 0 = coastal cod sample, 1 = North Sea ... : SNP genotyping, ocenographic modelling, computer simulations ... |
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