Table S7 (Excel): Genes responding to heat stress.

Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time point...

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Bibliographic Details
Main Authors: Jueterbock, Alexander, Franssen, Susanne U., Bergmann, Nina, Gu, Jenny, Coyer, James A., Reusch, Thorsten B.H., Bornberg-Bauer, Erich, Olsen, Jeanine L.
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2016
Subjects:
Online Access:https://dx.doi.org/10.5061/dryad.vf5fk/7
http://datadryad.org/resource/doi:10.5061/dryad.vf5fk/7
id ftdatacite:10.5061/dryad.vf5fk/7
record_format openpolar
spelling ftdatacite:10.5061/dryad.vf5fk/7 2023-05-15T17:34:55+02:00 Table S7 (Excel): Genes responding to heat stress. Jueterbock, Alexander Franssen, Susanne U. Bergmann, Nina Gu, Jenny Coyer, James A. Reusch, Thorsten B.H. Bornberg-Bauer, Erich Olsen, Jeanine L. 2016 https://dx.doi.org/10.5061/dryad.vf5fk/7 http://datadryad.org/resource/doi:10.5061/dryad.vf5fk/7 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.vf5fk http://creativecommons.org/publicdomain/zero/1.0 CC0 RNAseq Heatwave Global warming Transcriptomics Common-garden experiment Differential expression North Atlantic Zostera marina dataset Dataset DataFile 2016 ftdatacite https://doi.org/10.5061/dryad.vf5fk/7 https://doi.org/10.5061/dryad.vf5fk 2021-11-05T12:55:41Z Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time points 5, 7, and 9) are represented for all samples in Tab. S7b, for Doverodde samples Tab. S7f, for Gabicce Mare samples in Tab. S7g, for Great Bay samples in Tab. S7h, and for Waquoit samples in Tab. S7i. ZosmaID (column A): the gene ID based on the Zostera marina genome annotation v2.1 (GenBank Accession: LFYR00000000); mRNAID (column B): the mapped sequence ID; Source (column C): the source of annotation (inference from homology or top BLAST hit); Description (column D): the gene description; baseMean (column E): the mean of normalized counts for all samples; log2FoldChange (column F): the log2 fold change in normalized expression between all control samples and all stressed samples; lfcSE (column G): the standard error of the log2 fold change; stat (column H): the Wald test statistic for differential expression; pvalue (column I): the p-value; padj (column J): the p-value adjusted by the Benjamini-Hochberg method to control for false discovery rate; sdcol(column K), the standard deviation of expression counts that were normalized by size factors for all samples. The following columns represent regularized log-transformed expression values of all libraries that were included in the test. Dataset North Atlantic DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic RNAseq
Heatwave
Global warming
Transcriptomics
Common-garden experiment
Differential expression
North Atlantic
Zostera marina
spellingShingle RNAseq
Heatwave
Global warming
Transcriptomics
Common-garden experiment
Differential expression
North Atlantic
Zostera marina
Jueterbock, Alexander
Franssen, Susanne U.
Bergmann, Nina
Gu, Jenny
Coyer, James A.
Reusch, Thorsten B.H.
Bornberg-Bauer, Erich
Olsen, Jeanine L.
Table S7 (Excel): Genes responding to heat stress.
topic_facet RNAseq
Heatwave
Global warming
Transcriptomics
Common-garden experiment
Differential expression
North Atlantic
Zostera marina
description Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time points 5, 7, and 9) are represented for all samples in Tab. S7b, for Doverodde samples Tab. S7f, for Gabicce Mare samples in Tab. S7g, for Great Bay samples in Tab. S7h, and for Waquoit samples in Tab. S7i. ZosmaID (column A): the gene ID based on the Zostera marina genome annotation v2.1 (GenBank Accession: LFYR00000000); mRNAID (column B): the mapped sequence ID; Source (column C): the source of annotation (inference from homology or top BLAST hit); Description (column D): the gene description; baseMean (column E): the mean of normalized counts for all samples; log2FoldChange (column F): the log2 fold change in normalized expression between all control samples and all stressed samples; lfcSE (column G): the standard error of the log2 fold change; stat (column H): the Wald test statistic for differential expression; pvalue (column I): the p-value; padj (column J): the p-value adjusted by the Benjamini-Hochberg method to control for false discovery rate; sdcol(column K), the standard deviation of expression counts that were normalized by size factors for all samples. The following columns represent regularized log-transformed expression values of all libraries that were included in the test.
format Dataset
author Jueterbock, Alexander
Franssen, Susanne U.
Bergmann, Nina
Gu, Jenny
Coyer, James A.
Reusch, Thorsten B.H.
Bornberg-Bauer, Erich
Olsen, Jeanine L.
author_facet Jueterbock, Alexander
Franssen, Susanne U.
Bergmann, Nina
Gu, Jenny
Coyer, James A.
Reusch, Thorsten B.H.
Bornberg-Bauer, Erich
Olsen, Jeanine L.
author_sort Jueterbock, Alexander
title Table S7 (Excel): Genes responding to heat stress.
title_short Table S7 (Excel): Genes responding to heat stress.
title_full Table S7 (Excel): Genes responding to heat stress.
title_fullStr Table S7 (Excel): Genes responding to heat stress.
title_full_unstemmed Table S7 (Excel): Genes responding to heat stress.
title_sort table s7 (excel): genes responding to heat stress.
publisher Dryad Digital Repository
publishDate 2016
url https://dx.doi.org/10.5061/dryad.vf5fk/7
http://datadryad.org/resource/doi:10.5061/dryad.vf5fk/7
genre North Atlantic
genre_facet North Atlantic
op_relation https://dx.doi.org/10.5061/dryad.vf5fk
op_rights http://creativecommons.org/publicdomain/zero/1.0
op_rightsnorm CC0
op_doi https://doi.org/10.5061/dryad.vf5fk/7
https://doi.org/10.5061/dryad.vf5fk
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