Table S7 (Excel): Genes responding to heat stress.
Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time point...
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ftdatacite:10.5061/dryad.vf5fk/7 2023-05-15T17:34:55+02:00 Table S7 (Excel): Genes responding to heat stress. Jueterbock, Alexander Franssen, Susanne U. Bergmann, Nina Gu, Jenny Coyer, James A. Reusch, Thorsten B.H. Bornberg-Bauer, Erich Olsen, Jeanine L. 2016 https://dx.doi.org/10.5061/dryad.vf5fk/7 http://datadryad.org/resource/doi:10.5061/dryad.vf5fk/7 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.vf5fk http://creativecommons.org/publicdomain/zero/1.0 CC0 RNAseq Heatwave Global warming Transcriptomics Common-garden experiment Differential expression North Atlantic Zostera marina dataset Dataset DataFile 2016 ftdatacite https://doi.org/10.5061/dryad.vf5fk/7 https://doi.org/10.5061/dryad.vf5fk 2021-11-05T12:55:41Z Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time points 5, 7, and 9) are represented for all samples in Tab. S7b, for Doverodde samples Tab. S7f, for Gabicce Mare samples in Tab. S7g, for Great Bay samples in Tab. S7h, and for Waquoit samples in Tab. S7i. ZosmaID (column A): the gene ID based on the Zostera marina genome annotation v2.1 (GenBank Accession: LFYR00000000); mRNAID (column B): the mapped sequence ID; Source (column C): the source of annotation (inference from homology or top BLAST hit); Description (column D): the gene description; baseMean (column E): the mean of normalized counts for all samples; log2FoldChange (column F): the log2 fold change in normalized expression between all control samples and all stressed samples; lfcSE (column G): the standard error of the log2 fold change; stat (column H): the Wald test statistic for differential expression; pvalue (column I): the p-value; padj (column J): the p-value adjusted by the Benjamini-Hochberg method to control for false discovery rate; sdcol(column K), the standard deviation of expression counts that were normalized by size factors for all samples. The following columns represent regularized log-transformed expression values of all libraries that were included in the test. Dataset North Atlantic DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
RNAseq Heatwave Global warming Transcriptomics Common-garden experiment Differential expression North Atlantic Zostera marina |
spellingShingle |
RNAseq Heatwave Global warming Transcriptomics Common-garden experiment Differential expression North Atlantic Zostera marina Jueterbock, Alexander Franssen, Susanne U. Bergmann, Nina Gu, Jenny Coyer, James A. Reusch, Thorsten B.H. Bornberg-Bauer, Erich Olsen, Jeanine L. Table S7 (Excel): Genes responding to heat stress. |
topic_facet |
RNAseq Heatwave Global warming Transcriptomics Common-garden experiment Differential expression North Atlantic Zostera marina |
description |
Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time points 5, 7, and 9) are represented for all samples in Tab. S7b, for Doverodde samples Tab. S7f, for Gabicce Mare samples in Tab. S7g, for Great Bay samples in Tab. S7h, and for Waquoit samples in Tab. S7i. ZosmaID (column A): the gene ID based on the Zostera marina genome annotation v2.1 (GenBank Accession: LFYR00000000); mRNAID (column B): the mapped sequence ID; Source (column C): the source of annotation (inference from homology or top BLAST hit); Description (column D): the gene description; baseMean (column E): the mean of normalized counts for all samples; log2FoldChange (column F): the log2 fold change in normalized expression between all control samples and all stressed samples; lfcSE (column G): the standard error of the log2 fold change; stat (column H): the Wald test statistic for differential expression; pvalue (column I): the p-value; padj (column J): the p-value adjusted by the Benjamini-Hochberg method to control for false discovery rate; sdcol(column K), the standard deviation of expression counts that were normalized by size factors for all samples. The following columns represent regularized log-transformed expression values of all libraries that were included in the test. |
format |
Dataset |
author |
Jueterbock, Alexander Franssen, Susanne U. Bergmann, Nina Gu, Jenny Coyer, James A. Reusch, Thorsten B.H. Bornberg-Bauer, Erich Olsen, Jeanine L. |
author_facet |
Jueterbock, Alexander Franssen, Susanne U. Bergmann, Nina Gu, Jenny Coyer, James A. Reusch, Thorsten B.H. Bornberg-Bauer, Erich Olsen, Jeanine L. |
author_sort |
Jueterbock, Alexander |
title |
Table S7 (Excel): Genes responding to heat stress. |
title_short |
Table S7 (Excel): Genes responding to heat stress. |
title_full |
Table S7 (Excel): Genes responding to heat stress. |
title_fullStr |
Table S7 (Excel): Genes responding to heat stress. |
title_full_unstemmed |
Table S7 (Excel): Genes responding to heat stress. |
title_sort |
table s7 (excel): genes responding to heat stress. |
publisher |
Dryad Digital Repository |
publishDate |
2016 |
url |
https://dx.doi.org/10.5061/dryad.vf5fk/7 http://datadryad.org/resource/doi:10.5061/dryad.vf5fk/7 |
genre |
North Atlantic |
genre_facet |
North Atlantic |
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https://dx.doi.org/10.5061/dryad.vf5fk |
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http://creativecommons.org/publicdomain/zero/1.0 |
op_rightsnorm |
CC0 |
op_doi |
https://doi.org/10.5061/dryad.vf5fk/7 https://doi.org/10.5061/dryad.vf5fk |
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1766133893715460096 |