Table S7 (Excel): Genes responding to heat stress.

Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time point...

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Bibliographic Details
Main Authors: Jueterbock, Alexander, Franssen, Susanne U., Bergmann, Nina, Gu, Jenny, Coyer, James A., Reusch, Thorsten B.H., Bornberg-Bauer, Erich, Olsen, Jeanine L.
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2016
Subjects:
RNAseq
Heatwave
Global warming
Transcriptomics
Common-garden experiment
Differential expression
North Atlantic
Zostera marina
Online Access:https://dx.doi.org/10.5061/dryad.vf5fk/7
http://datadryad.org/resource/doi:10.5061/dryad.vf5fk/7
Description
Summary:Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time points 5, 7, and 9) are represented for all samples in Tab. S7b, for Doverodde samples Tab. S7f, for Gabicce Mare samples in Tab. S7g, for Great Bay samples in Tab. S7h, and for Waquoit samples in Tab. S7i. ZosmaID (column A): the gene ID based on the Zostera marina genome annotation v2.1 (GenBank Accession: LFYR00000000); mRNAID (column B): the mapped sequence ID; Source (column C): the source of annotation (inference from homology or top BLAST hit); Description (column D): the gene description; baseMean (column E): the mean of normalized counts for all samples; log2FoldChange (column F): the log2 fold change in normalized expression between all control samples and all stressed samples; lfcSE (column G): the standard error of the log2 fold change; stat (column H): the Wald test statistic for differential expression; pvalue (column I): the p-value; padj (column J): the p-value adjusted by the Benjamini-Hochberg method to control for false discovery rate; sdcol(column K), the standard deviation of expression counts that were normalized by size factors for all samples. The following columns represent regularized log-transformed expression values of all libraries that were included in the test.

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